>UCRH_RAT (Q5M9I5) Ubiquinol-cytochrome c reductase complex 11 kDa protein,|
           mitochondrial precursor (EC 1.10.2.2) (Mitochondrial
           hinge protein) (Cytochrome C1, nonheme 11 kDa protein)
           (Complex III subunit VIII)
          Length = 89

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 21  DPKTEETEELATPKLKITTMPEVCQEKEK 107
           DPK EE EEL  P   +TT+ E C++ EK
Sbjct: 15  DPKEEEEEELVDP---LTTVREHCEQLEK 40

>UCRH_MOUSE (P99028) Ubiquinol-cytochrome c reductase complex 11 kDa protein,|
           mitochondrial precursor (EC 1.10.2.2) (Mitochondrial
           hinge protein) (Cytochrome C1, nonheme 11 kDa protein)
           (Complex III subunit VIII)
          Length = 89

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = +3

Query: 21  DPKTEETEELATPKLKITTMPEVCQEKEK 107
           DPK EE EEL  P   +TT+ E C++ EK
Sbjct: 15  DPKEEEEEELVDP---LTTVREHCEQLEK 40

>DUS11_MOUSE (Q6NXK5) RNA/RNP complex-1-interacting phosphatase (EC 3.1.3.-)|
           (Phosphatase that interacts with RNA/RNP complex 1)
           (Dual-specificity protein phosphatase 11)
          Length = 321

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +3

Query: 24  PKTEETEELATPKLKITTMPEVCQEKEKQRRAGGNITPSTSLLGKTR 164
           P+T+  E+ A P  ++ T  +  ++K ++ R GG++ PS     +T+
Sbjct: 212 PRTDGLEDSADPTEQVYTNNKPVKKKPRKNRRGGHLAPSQHFQHQTQ 258

>KRA49_HUMAN (Q9BYQ8) Keratin-associated protein 4-9 (Keratin-associated protein|
           4.9) (Ultrahigh sulfur keratin-associated protein 4.9)
           (Fragment)
          Length = 191

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
 Frame = +1

Query: 214 ASACRSD---PSCTHPYCLNYSCAGTTLCH 294
           +S CR     P C  P C   SC  TT CH
Sbjct: 68  SSCCRPQCCQPVCCQPTCCRPSCCETTCCH 97

>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump|
           3)
          Length = 948

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 63  LKITTMPEVCQEKEKQRRAG--GNITPSTSLLGKTRD 167
           +K+ T  ++   KE  RR G   N+ PS+SLLGK +D
Sbjct: 507 VKMITGDQLAIAKETGRRLGMGSNMYPSSSLLGKHKD 543

>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25|
          Length = 561

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
 Frame = +1

Query: 19  LTQKQRKQRSLQRPN*RSQQCLRFA----KKKKNNGGPEGTSHHRLHYWAKQ------GI 168
           +T+  R +R+  RP  + +   RFA    K+K+ N  P+G    R    A +      G 
Sbjct: 405 VTRSHRDKRNSYRPEYKDEDDKRFAQRKDKEKEMNALPKGLQQMRAKLLASKKTTTVSGT 464

Query: 169 FSAHDDALTGSQLS*ASACRSDPS 240
                 A +GSQ + ++A  S P+
Sbjct: 465 SQTPTSAPSGSQRTPSAASGSSPT 488

>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1290

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 118 PEGTSHHRLHYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYC 258
           PE  ++   HYW    I S+H+  LTG Q S  S+  +   C    C
Sbjct: 319 PETMNNPLSHYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361

>HSP90_THEPA (P24724) Heat shock protein 90 (HSP90)|
          Length = 721

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 15  ELDPKTEETEELATPKLK-ITTMPEVCQEKEKQRRAGGNITPSTSLLGKTR 164
           E  PK ++ E++   K+  +T   E  +EK+K++R   N+T    +L K +
Sbjct: 239 EEKPKDDKVEDVTDEKVTDVTDEEEKKEEKKKKKRKVTNVTREWEMLNKQK 289

>Y735_AGRT5 (Q8UHE7) Hypothetical RNA methyltransferase Atu0735/AGR_C_1331 (EC|
           2.1.1.-)
          Length = 416

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 184 DALTGSQLS*ASACRSDPSCTH--PYCLNYSCAGTTLCH 294
           D  T   ++ ASA R DP C H  P  +N +C G +L H
Sbjct: 44  DQGTVMSITEASADRRDPVCRHFGPEGINGTCGGCSLQH 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,258,409
Number of Sequences: 219361
Number of extensions: 897204
Number of successful extensions: 2526
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2510
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)