ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 268 9e-69
2gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 60 4e-06
3gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.062
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.062
5gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome III BAC... 44 0.25
6gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 geno... 44 0.25
7gb|AC126686.3| Mus musculus BAC clone RP23-148C24 from 18, compl... 44 0.25
8emb|AL663022.4|OSJN00222 Oryza sativa genomic DNA, chromosome 4,... 44 0.25
9emb|AL662986.3|OSJN00187 Oryza sativa genomic DNA, chromosome 4,... 44 0.25
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
11gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14... 44 0.25
12emb|AL928573.14| Zebrafish DNA sequence from clone DKEY-11F5, co... 44 0.25
13gb|AC124443.3| Mus musculus chromosome 18 clone RP24-178K3, comp... 44 0.25
14emb|CR378662.1| M.truncatula DNA sequence from clone MTH2-41N19 ... 42 0.97
15emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.97
16gb|AC105910.10| Homo sapiens chromosome 8, clone CTD-2036J7, com... 42 0.97
17emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.97
18ref|NM_102102.2| Arabidopsis thaliana transporter AT1G22530 mRNA... 40 3.8
19gb|AC166653.5| Mus musculus BAC clone RP24-84J23 from chromosome... 40 3.8
20gb|AC007441.9| Drosophila melanogaster clone BACR10E03, complete... 40 3.8
21gb|AC160545.8| Mus musculus chromosome 1, clone RP23-217K18, com... 40 3.8
22gb|BC076955.1| Xenopus tropicalis MGC89374 protein, mRNA (cDNA c... 40 3.8
23ref|XM_359648.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 3.8
24gb|AC004994.1| Homo sapiens PAC clone RP5-1194E15 from 7, comple... 40 3.8
25gb|AC145378.2| Pan troglodytes BAC clone RP43-56P12 from 7, comp... 40 3.8
26gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosom... 40 3.8
27gb|AC098709.3| Mus musculus BAC clone RP23-1K14 from 1, complete... 40 3.8
28gb|AC117550.8| Mus musculus chromosome 1, clone RP24-571N3, comp... 40 3.8
29gb|AC145783.1| Pan troglodytes BAC clone RP43-27O9 from 7, compl... 40 3.8
30gb|AC142310.1| Pan troglodytes BAC clone RP43-45P13 from 7, comp... 40 3.8
31gb|AC152421.8| Medicago truncatula clone mth2-7h20, complete seq... 40 3.8
32gb|AY034966.2| Arabidopsis thaliana At1g22530 mRNA sequence 40 3.8
33emb|AL133214.12| Human DNA sequence from clone RP11-163F8 on chr... 40 3.8
34gb|AY133810.1| Arabidopsis thaliana clone U11092 unknown protein... 40 3.8
35gb|AY091145.1| Arabidopsis thaliana unknown protein (At1g22530) ... 40 3.8
36ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.8
37dbj|AK164419.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 3.8
38gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12... 40 3.8
39ref|NM_001005061.1| Xenopus tropicalis MGC89374 protein (MGC8937... 40 3.8
40dbj|AB009056.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.8
41gb|AE003703.3| Drosophila melanogaster chromosome 3R, section 41... 40 3.8
42emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chr... 40 3.8 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  268 bits (135), Expect = 9e-69
 Identities = 151/156 (96%), Gaps = 4/156 (2%)
 Strand = Plus / Minus

                                                                        
Query: 143  ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 203  agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 258
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                                
Query: 259  cttaattattcatgcgccggcacaactctctgtcac 294
            ||||||||||||||| ||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgtcac 2741
to top
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 136  catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 185
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 218  ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 262
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
to top
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 250    ccttattgccttaattattcatg 272
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.062
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 250   ccttattgccttaattattcatg 272
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 250      ccttattgccttaattattcatg 272
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.062
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 250      ccttattgccttaattattcatg 272
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060
to top
>gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence,
             complete sequence
          Length = 140064

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 28    aaacagaggaaacagaggagct 49
             ||||||||||||||||||||||
Sbjct: 33749 aaacagaggaaacagaggagct 33770
to top
>gb|AC007504.3| Arabidopsis thaliana chromosome I BAC F13F21 genomic sequence,
           complete sequence
          Length = 125021

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 26  aaaaacagaggaaacagaggag 47
           ||||||||||||||||||||||
Sbjct: 966 aaaaacagaggaaacagaggag 987
to top
>gb|AC126686.3| Mus musculus BAC clone RP23-148C24 from 18, complete sequence
          Length = 232817

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 29    aacagaggaaacagaggagcttgcaa 54
             ||||||||||||||||||| ||||||
Sbjct: 33676 aacagaggaaacagaggagattgcaa 33651
to top
>emb|AL663022.4|OSJN00222 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0054D14,
             complete sequence
          Length = 160587

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 26    aaaaacagaggaaacagaggag 47
             ||||||||||||||||||||||
Sbjct: 78332 aaaaacagaggaaacagaggag 78311
to top
>emb|AL662986.3|OSJN00187 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087H01,
             complete sequence
          Length = 166906

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 26    aaaaacagaggaaacagaggag 47
             ||||||||||||||||||||||
Sbjct: 57998 aaaaacagaggaaacagaggag 58019
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 26       aaaaacagaggaaacagaggag 47
                ||||||||||||||||||||||
Sbjct: 15061871 aaaaacagaggaaacagaggag 15061850



 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 26       aaaaacagaggaaacagaggag 47
                ||||||||||||||||||||||
Sbjct: 14325078 aaaaacagaggaaacagaggag 14325099
to top
>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete
             sequence
          Length = 104679

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 26    aaaaacagaggaaacagaggag 47
             ||||||||||||||||||||||
Sbjct: 93913 aaaaacagaggaaacagaggag 93934
to top
>emb|AL928573.14| Zebrafish DNA sequence from clone DKEY-11F5, complete sequence
          Length = 244471

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 89    ttgccaagaaaaagaaaaacaa 110
             ||||||||||||||||||||||
Sbjct: 72194 ttgccaagaaaaagaaaaacaa 72173
to top
>gb|AC124443.3| Mus musculus chromosome 18 clone RP24-178K3, complete sequence
          Length = 169326

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 29    aacagaggaaacagaggagcttgcaa 54
             ||||||||||||||||||| ||||||
Sbjct: 36220 aacagaggaaacagaggagattgcaa 36245
to top
>emb|CR378662.1| M.truncatula DNA sequence from clone MTH2-41N19 on chromosome 3,
             complete sequence
          Length = 119227

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    aaaaacagaggaaacagagga 46
             |||||||||||||||||||||
Sbjct: 84543 aaaaacagaggaaacagagga 84563
to top
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   aaacaagggattttttctgca 177
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585
to top
>gb|AC105910.10| Homo sapiens chromosome 8, clone CTD-2036J7, complete sequence
          Length = 190836

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 21    gacccaaaaacagaggaaaca 41
             |||||||||||||||||||||
Sbjct: 71342 gacccaaaaacagaggaaaca 71322
to top
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 154   gcaaaacaagggattttttct 174
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614
to top
>ref|NM_102102.2| Arabidopsis thaliana transporter AT1G22530 mRNA, complete cds
          Length = 2448

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  aaaacagaggaaacagagga 46
           ||||||||||||||||||||
Sbjct: 513 aaaacagaggaaacagagga 532
to top
>gb|AC166653.5| Mus musculus BAC clone RP24-84J23 from chromosome 14, complete sequence
          Length = 223142

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     tgccaagaaaaagaaaaaca 109
              ||||||||||||||||||||
Sbjct: 157533 tgccaagaaaaagaaaaaca 157514
to top
>gb|AC007441.9| Drosophila melanogaster clone BACR10E03, complete sequence
          Length = 195212

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     gtttgccaagaaaaagaaaa 106
              ||||||||||||||||||||
Sbjct: 106792 gtttgccaagaaaaagaaaa 106811
to top
>gb|AC160545.8| Mus musculus chromosome 1, clone RP23-217K18, complete sequence
          Length = 240081

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     acagaggaaacagaggagct 49
              ||||||||||||||||||||
Sbjct: 122557 acagaggaaacagaggagct 122538
to top
>gb|BC076955.1| Xenopus tropicalis MGC89374 protein, mRNA (cDNA clone MGC:89374
            IMAGE:6988658), complete cds
          Length = 3668

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   ggaaacagaggagcttgcaa 54
            ||||||||||||||||||||
Sbjct: 3127 ggaaacagaggagcttgcaa 3146
to top
>ref|XM_359648.1| Magnaporthe grisea 70-15 hypothetical protein (MG05129.4) partial
           mRNA
          Length = 6036

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 88  tttgccaagaaaaagaaaaa 107
           ||||||||||||||||||||
Sbjct: 517 tttgccaagaaaaagaaaaa 536
to top
>gb|AC004994.1| Homo sapiens PAC clone RP5-1194E15 from 7, complete sequence
          Length = 80331

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    tttgccaagaaaaagaaaaa 107
             ||||||||||||||||||||
Sbjct: 13792 tttgccaagaaaaagaaaaa 13811
to top
>gb|AC145378.2| Pan troglodytes BAC clone RP43-56P12 from 7, complete sequence
          Length = 186835

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     tttgccaagaaaaagaaaaa 107
              ||||||||||||||||||||
Sbjct: 170823 tttgccaagaaaaagaaaaa 170842
to top
>gb|AC125174.3| Mus musculus BAC clone RP24-544G11 from chromosome 16, complete
             sequence
          Length = 196646

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     tatttgggcaacttgagctt 20
             ||||||||||||||||||||
Sbjct: 59357 tatttgggcaacttgagctt 59376
to top
>gb|AC098709.3| Mus musculus BAC clone RP23-1K14 from 1, complete sequence
          Length = 189774

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     tgccaagaaaaagaaaaaca 109
              ||||||||||||||||||||
Sbjct: 173712 tgccaagaaaaagaaaaaca 173693
to top
>gb|AC117550.8| Mus musculus chromosome 1, clone RP24-571N3, complete sequence
          Length = 156349

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     tgccaagaaaaagaaaaaca 109
              ||||||||||||||||||||
Sbjct: 112213 tgccaagaaaaagaaaaaca 112232
to top
>gb|AC145783.1| Pan troglodytes BAC clone RP43-27O9 from 7, complete sequence
          Length = 175651

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     tttgccaagaaaaagaaaaa 107
              ||||||||||||||||||||
Sbjct: 139667 tttgccaagaaaaagaaaaa 139686
to top
>gb|AC142310.1| Pan troglodytes BAC clone RP43-45P13 from 7, complete sequence
          Length = 197471

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    tttgccaagaaaaagaaaaa 107
             ||||||||||||||||||||
Sbjct: 53755 tttgccaagaaaaagaaaaa 53774
to top
>gb|AC152421.8| Medicago truncatula clone mth2-7h20, complete sequence
          Length = 127540

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 27   aaaacagaggaaacagagga 46
            ||||||||||||||||||||
Sbjct: 5328 aaaacagaggaaacagagga 5347
to top
>gb|AY034966.2| Arabidopsis thaliana At1g22530 mRNA sequence
          Length = 993

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  aaaacagaggaaacagagga 46
           ||||||||||||||||||||
Sbjct: 480 aaaacagaggaaacagagga 499
to top
>emb|AL133214.12| Human DNA sequence from clone RP11-163F8 on chromosome 9p21.2-23 Contains
              the 3' end of a novel gene (FLJ20276), the 5' end of the
              SH3GL2 gene for SH3-domain GRB2-like 2 (CNSA2, SH3P4,
              EEN-B1, SH3D2A), a poly(A)-binding protein pseudogene and a
              CpG Island, complete sequence
          Length = 154621

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     aagaaaaagaaaaacaacgg 113
              ||||||||||||||||||||
Sbjct: 104157 aagaaaaagaaaaacaacgg 104138
to top
>gb|AY133810.1| Arabidopsis thaliana clone U11092 unknown protein (At1g22530) mRNA,
           complete cds
          Length = 2083

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  aaaacagaggaaacagagga 46
           ||||||||||||||||||||
Sbjct: 397 aaaacagaggaaacagagga 416
to top
>gb|AY091145.1| Arabidopsis thaliana unknown protein (At1g22530) mRNA, complete cds
          Length = 2387

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  aaaacagaggaaacagagga 46
           ||||||||||||||||||||
Sbjct: 513 aaaacagaggaaacagagga 532
to top
>ref|XM_779982.1| PREDICTED: Strongylocentrotus purpuratus similar to periostin
            (LOC579890), mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  ggagggaacatcacaccatc 139
            ||||||||||||||||||||
Sbjct: 1457 ggagggaacatcacaccatc 1438
to top
>dbj|AK164419.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:D230016I11 product:unclassifiable, full
            insert sequence
          Length = 3499

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 30   acagaggaaacagaggagct 49
            ||||||||||||||||||||
Sbjct: 1712 acagaggaaacagaggagct 1693
to top
>gb|AC006551.6|AC006551 Arabidopsis thaliana chromosome I BAC F12K8 genomic sequence, complete
             sequence
          Length = 107200

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    aaaacagaggaaacagagga 46
             ||||||||||||||||||||
Sbjct: 50105 aaaacagaggaaacagagga 50124
to top
>ref|NM_001005061.1| Xenopus tropicalis MGC89374 protein (MGC89374), mRNA
          Length = 3668

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   ggaaacagaggagcttgcaa 54
            ||||||||||||||||||||
Sbjct: 3127 ggaaacagaggagcttgcaa 3146
to top
>dbj|AB009056.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZF18
          Length = 65958

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    tttgccaagaaaaagaaaaa 107
             ||||||||||||||||||||
Sbjct: 64395 tttgccaagaaaaagaaaaa 64376
to top
>gb|AE003703.3| Drosophila melanogaster chromosome 3R, section 41 of 118 of the
             complete sequence
          Length = 223948

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    gtttgccaagaaaaagaaaa 106
             ||||||||||||||||||||
Sbjct: 41696 gtttgccaagaaaaagaaaa 41715
to top
>emb|AL732475.6| Mouse DNA sequence from clone RP23-202H24 on chromosome X, complete
             sequence
          Length = 165720

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    agaggaaacagaggagcttg 51
             ||||||||||||||||||||
Sbjct: 11891 agaggaaacagaggagcttg 11910


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,842,599
Number of Sequences: 3902068
Number of extensions: 3842599
Number of successful extensions: 179294
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 179030
Number of HSP's gapped (non-prelim): 263
length of query: 294
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 272
effective length of database: 17,147,199,772
effective search space: 4664038337984
effective search space used: 4664038337984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top