ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL118509.9|HSJ770C23 Human DNA sequence from clone RP4-770C2... 42 0.49
2gb|AC103792.2| Homo sapiens chromosome 11, clone CTD-2384B9, com... 40 1.9
3dbj|AK147657.1| Mus musculus adult male brain UNDEFINED_CELL_LIN... 40 1.9
4dbj|AK147616.1| Mus musculus adult male brain UNDEFINED_CELL_LIN... 40 1.9
5dbj|AK170777.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 1.9
6dbj|AK170123.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 1.9
7dbj|AK052401.1| Mus musculus 13 days embryo lung cDNA, RIKEN ful... 40 1.9
8dbj|AK053173.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 40 1.9
9ref|NM_177343.3| Mus musculus calcium/calmodulin-dependent prote... 40 1.9
10emb|AL732403.9| Mouse DNA sequence from clone RP23-119L20 on chr... 40 1.9
11gb|AC138290.9| Mus musculus chromosome 10, clone RP23-245C15, co... 38 7.7
12emb|CR384074.11| Zebrafish DNA sequence from clone DKEY-229H19 i... 38 7.7
13emb|CR352265.10| Zebrafish DNA sequence from clone DKEY-33C18 in... 38 7.7
14gb|AC145132.2| Homo sapiens chromosome 5 clone RP11-1113N2, comp... 38 7.7
15ref|XM_724085.1| Plasmodium yoelii yoelii str. 17XNL erythrocyte... 38 7.7
16ref|XM_671328.1| Plasmodium berghei strain ANKA hypothetical pro... 38 7.7
17gb|AC144375.14| Medicago truncatula clone mth2-11p13, complete s... 38 7.7
18gb|AC158920.4| Mus musculus chromosome 5, clone RP24-238C7, comp... 38 7.7
19gb|AY130859.1| Homo sapiens cyclin-dependent kinase 7 (CDK7) gen... 38 7.7
20gb|AC093571.13| Pan troglodytes clone rp43-118h18, complete sequ... 38 7.7
21gb|AC093223.3| Homo sapiens chromosome 5 clone CTD-2220G6, compl... 38 7.7
22gb|AC011197.12| Homo sapiens chromosome 10 clone RP11-322C8, com... 38 7.7
23gb|AY081217.1| Daucus carota leucine-rich receptor-like protein ... 38 7.7
24gb|AC021120.6| Homo sapiens BAC clone RP11-347O8 from 4, complet... 38 7.7
25gb|AC162454.3| Mus musculus chromosome 1, clone RP23-7D20, compl... 38 7.7
26gb|AC102826.18| Mus musculus chromosome 5, clone RP24-236I1, com... 38 7.7
27ref|XM_342883.2| PREDICTED: Rattus norvegicus similar to RIKEN c... 38 7.7
28emb|BX530067.4| Zebrafish DNA sequence from clone DKEY-194C21 in... 38 7.7
29gb|AC018514.7|AC018514 Homo sapiens chromosome 14 clone RP11-76C... 38 7.7
30gb|AF224669.1|AF213884S2 Homo sapiens mannosidase, beta A, lysos... 38 7.7
31emb|AL954221.1| Pan troglodytes chromosome 22 clone RP43-105F23 ... 38 7.7
32gb|AC133581.22| Mus musculus chromosome 1, clone RP24-395P3, com... 38 7.7
33emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 i... 38 7.7
34gb|AC122301.4| Mus musculus BAC clone RP23-276C6 from 10, comple... 38 7.7
35dbj|AP006647.1| Lotus japonicus genomic DNA, chromosome 2, clone... 38 7.7
36dbj|AP006352.1| Lotus japonicus genomic DNA, chromosome 2, clone... 38 7.7
37dbj|AP006138.1| Lotus japonicus genomic DNA, chromosome 1, clone... 38 7.7
38dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone... 38 7.7
39gb|AC140360.4| Mus musculus BAC clone RP24-241G4 from chromosome... 38 7.7 
>emb|AL118509.9|HSJ770C23 Human DNA sequence from clone RP4-770C23 on chromosome 20 Contains part
             of the C20orf23 gene for a novel protein similar to KIF1
             type and other kinesin-like proteins, complete sequence
          Length = 81487

 Score = 42.1 bits (21), Expect = 0.49
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     atccaaactacaaagtaaact 21
             |||||||||||||||||||||
Sbjct: 26530 atccaaactacaaagtaaact 26550
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>gb|AC103792.2| Homo sapiens chromosome 11, clone CTD-2384B9, complete sequence
          Length = 115626

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    acaaagtaaactcaggagct 29
             ||||||||||||||||||||
Sbjct: 43585 acaaagtaaactcaggagct 43566
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>dbj|AK147657.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
            full-length enriched library, clone:M5C1102I08
            product:calcium/calmodulin-dependent protein kinase ID,
            full insert sequence
          Length = 6870

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   attttaggtggaaaggaaaa 68
            ||||||||||||||||||||
Sbjct: 2472 attttaggtggaaaggaaaa 2491
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>dbj|AK147616.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
            full-length enriched library, clone:M5C1091G17
            product:calcium/calmodulin-dependent protein kinase ID,
            full insert sequence
          Length = 7200

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   attttaggtggaaaggaaaa 68
            ||||||||||||||||||||
Sbjct: 2803 attttaggtggaaaggaaaa 2822
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>dbj|AK170777.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630119H01
            product:calcium/calmodulin-dependent protein kinase ID,
            full insert sequence
          Length = 3528

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   attttaggtggaaaggaaaa 68
            ||||||||||||||||||||
Sbjct: 2568 attttaggtggaaaggaaaa 2587
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>dbj|AK170123.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630019N12
            product:calcium/calmodulin-dependent protein kinase ID,
            full insert sequence
          Length = 3731

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   attttaggtggaaaggaaaa 68
            ||||||||||||||||||||
Sbjct: 2444 attttaggtggaaaggaaaa 2463
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>dbj|AK052401.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430003N14
            product:calcium/calmodulin-dependent protein kinase ID,
            full insert sequence
          Length = 3519

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   attttaggtggaaaggaaaa 68
            ||||||||||||||||||||
Sbjct: 2224 attttaggtggaaaggaaaa 2243
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>dbj|AK053173.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030025C11
            product:calcium/calmodulin-dependent protein kinase ID,
            full insert sequence
          Length = 3503

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   attttaggtggaaaggaaaa 68
            ||||||||||||||||||||
Sbjct: 2557 attttaggtggaaaggaaaa 2576
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>ref|NM_177343.3| Mus musculus calcium/calmodulin-dependent protein kinase ID (Camk1d),
            mRNA
          Length = 7128

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   attttaggtggaaaggaaaa 68
            ||||||||||||||||||||
Sbjct: 2705 attttaggtggaaaggaaaa 2724
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>emb|AL732403.9| Mouse DNA sequence from clone RP23-119L20 on chromosome 2, complete
            sequence
          Length = 211892

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   attttaggtggaaaggaaaa 68
            ||||||||||||||||||||
Sbjct: 7030 attttaggtggaaaggaaaa 7049
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>gb|AC138290.9| Mus musculus chromosome 10, clone RP23-245C15, complete sequence
          Length = 151470

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 46    aaaattttaggtggaaaggaaaa 68
             ||||||||||| |||||||||||
Sbjct: 22105 aaaattttaggaggaaaggaaaa 22083
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>emb|CR384074.11| Zebrafish DNA sequence from clone DKEY-229H19 in linkage group 24,
              complete sequence
          Length = 138451

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 54     aggtggaaaggaaaagcac 72
              |||||||||||||||||||
Sbjct: 107016 aggtggaaaggaaaagcac 106998
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>emb|CR352265.10| Zebrafish DNA sequence from clone DKEY-33C18 in linkage group 24,
             complete sequence
          Length = 170032

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    aggtggaaaggaaaagcac 72
             |||||||||||||||||||
Sbjct: 24227 aggtggaaaggaaaagcac 24245
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>gb|AC145132.2| Homo sapiens chromosome 5 clone RP11-1113N2, complete sequence
          Length = 150263

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 60     aaaggaaaagcacttaatatgtt 82
              |||||||||||||| ||||||||
Sbjct: 143845 aaaggaaaagcactcaatatgtt 143823
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>ref|XM_724085.1| Plasmodium yoelii yoelii str. 17XNL erythrocyte membrane protein
            (PY01412) partial mRNA
          Length = 7755

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   aaaagcacttaatatgtta 83
            |||||||||||||||||||
Sbjct: 1827 aaaagcacttaatatgtta 1845
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>ref|XM_671328.1| Plasmodium berghei strain ANKA hypothetical protein (PB000253.03.0)
            partial mRNA
          Length = 3096

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   aaaagcacttaatatgtta 83
            |||||||||||||||||||
Sbjct: 1920 aaaagcacttaatatgtta 1938
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>gb|AC144375.14| Medicago truncatula clone mth2-11p13, complete sequence
          Length = 123953

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 86    taaaggtgactgactgcca 104
             |||||||||||||||||||
Sbjct: 67450 taaaggtgactgactgcca 67432
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>gb|AC158920.4| Mus musculus chromosome 5, clone RP24-238C7, complete sequence
          Length = 156671

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     taggtggaaaggaaaagca 71
              |||||||||||||||||||
Sbjct: 114109 taggtggaaaggaaaagca 114127
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>gb|AY130859.1| Homo sapiens cyclin-dependent kinase 7 (CDK7) gene, complete cds
          Length = 44226

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 60  aaaggaaaagcacttaatatgtt 82
           |||||||||||||| ||||||||
Sbjct: 238 aaaggaaaagcactcaatatgtt 260
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>gb|AC093571.13| Pan troglodytes clone rp43-118h18, complete sequence
          Length = 164807

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     ttttaggtggaaaggaaaa 68
              |||||||||||||||||||
Sbjct: 116366 ttttaggtggaaaggaaaa 116384
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>gb|AC093223.3| Homo sapiens chromosome 5 clone CTD-2220G6, complete sequence
          Length = 125980

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 60     aaaggaaaagcacttaatatgtt 82
              |||||||||||||| ||||||||
Sbjct: 101227 aaaggaaaagcactcaatatgtt 101205
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>gb|AC011197.12| Homo sapiens chromosome 10 clone RP11-322C8, complete sequence
          Length = 162784

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 37     tacactaccaaaattttaggtgg 59
              |||||||||||| ||||||||||
Sbjct: 148284 tacactaccaaacttttaggtgg 148306
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>gb|AY081217.1| Daucus carota leucine-rich receptor-like protein kinase mRNA, partial
            cds
          Length = 2196

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 105  gtttccatcctgcaggttc 123
            |||||||||||||||||||
Sbjct: 2170 gtttccatcctgcaggttc 2188
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>gb|AC021120.6| Homo sapiens BAC clone RP11-347O8 from 4, complete sequence
          Length = 193980

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     caaactacaaagtaaactc 22
             |||||||||||||||||||
Sbjct: 29227 caaactacaaagtaaactc 29209
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>gb|AC162454.3| Mus musculus chromosome 1, clone RP23-7D20, complete sequence
          Length = 209951

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 53    taggtggaaaggaaaagca 71
             |||||||||||||||||||
Sbjct: 95234 taggtggaaaggaaaagca 95216
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>gb|AC102826.18| Mus musculus chromosome 5, clone RP24-236I1, complete sequence
          Length = 162236

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 53     taggtggaaaggaaaagca 71
              |||||||||||||||||||
Sbjct: 160000 taggtggaaaggaaaagca 159982
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>ref|XM_342883.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310026E23
            (LOC362564), mRNA
          Length = 1999

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 56   gtggaaaggaaaagcactt 74
            |||||||||||||||||||
Sbjct: 1850 gtggaaaggaaaagcactt 1868
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>emb|BX530067.4| Zebrafish DNA sequence from clone DKEY-194C21 in linkage group 19,
             complete sequence
          Length = 203882

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 114   ctgcaggttcaggtccaaa 132
             |||||||||||||||||||
Sbjct: 80906 ctgcaggttcaggtccaaa 80888
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>gb|AC018514.7|AC018514 Homo sapiens chromosome 14 clone RP11-76C24 map 14q24.3-31, complete
             sequence
          Length = 157144

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 10    acaaagtaaactcaggagc 28
             |||||||||||||||||||
Sbjct: 91001 acaaagtaaactcaggagc 91019
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>gb|AF224669.1|AF213884S2 Homo sapiens mannosidase, beta A, lysosomal (MANBA) gene, and
            ubiquitin-conjugating enzyme E2D 3 (UBE2D3) genes,
            complete cds
          Length = 266941

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 4    caaactacaaagtaaactc 22
            |||||||||||||||||||
Sbjct: 5732 caaactacaaagtaaactc 5750
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>emb|AL954221.1| Pan troglodytes chromosome 22 clone RP43-105F23 map q21.2, complete
             sequence
          Length = 169077

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 94    actgactgccagtttccat 112
             |||||||||||||||||||
Sbjct: 81625 actgactgccagtttccat 81643
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>gb|AC133581.22| Mus musculus chromosome 1, clone RP24-395P3, complete sequence
          Length = 158696

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 53     taggtggaaaggaaaagca 71
              |||||||||||||||||||
Sbjct: 143428 taggtggaaaggaaaagca 143446
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>emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 in linkage group 7,
             complete sequence
          Length = 145555

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 108   tccatcctgcaggttcagg 126
             |||||||||||||||||||
Sbjct: 94240 tccatcctgcaggttcagg 94258
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>gb|AC122301.4| Mus musculus BAC clone RP23-276C6 from 10, complete sequence
          Length = 179801

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 46   aaaattttaggtggaaaggaaaa 68
            ||||||||||| |||||||||||
Sbjct: 7513 aaaattttaggaggaaaggaaaa 7535
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>dbj|AP006647.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT29F18, TM0312,
             complete sequence
          Length = 119276

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 56    gtggaaaggaaaagcactt 74
             |||||||||||||||||||
Sbjct: 16800 gtggaaaggaaaagcactt 16818
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>dbj|AP006352.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT40O04, TM0348,
            complete sequence
          Length = 105070

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 56   gtggaaaggaaaagcactt 74
            |||||||||||||||||||
Sbjct: 9666 gtggaaaggaaaagcactt 9648
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>dbj|AP006138.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT37A17, TM0240,
              complete sequence
          Length = 121317

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 56     gtggaaaggaaaagcactt 74
              |||||||||||||||||||
Sbjct: 113235 gtggaaaggaaaagcactt 113217
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>dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181,
              complete sequence
          Length = 185320

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 56     gtggaaaggaaaagcactt 74
              |||||||||||||||||||
Sbjct: 131512 gtggaaaggaaaagcactt 131494
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>gb|AC140360.4| Mus musculus BAC clone RP24-241G4 from chromosome 12, complete sequence
          Length = 181901

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 12    aaagtaaactcaggagctg 30
             |||||||||||||||||||
Sbjct: 64091 aaagtaaactcaggagctg 64073


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,509,880
Number of Sequences: 3902068
Number of extensions: 1509880
Number of successful extensions: 107050
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106983
Number of HSP's gapped (non-prelim): 67
length of query: 159
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 137
effective length of database: 17,147,199,772
effective search space: 2349166368764
effective search space used: 2349166368764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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