ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl24d04 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 85.9 bits (211), Expect = 2e-17 Identities = 39/40 (97%), Positives = 39/40 (97%) Frame = -2 Query: 281 HYPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 H PELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN Sbjct: 819 HDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 858
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 70.5 bits (171), Expect = 1e-12 Identities = 32/36 (88%), Positives = 34/36 (94%) Frame = -2 Query: 269 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 LKNRNGPA+FPYMLLYPNTSD GAAAG+TAKGIPN Sbjct: 827 LKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPN 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 64.3 bits (155), Expect = 8e-11 Identities = 28/38 (73%), Positives = 33/38 (86%) Frame = -2 Query: 275 PELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 P LKNR GPA FPY L++PNTSD+KGAA G+TA+GIPN Sbjct: 822 PLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPN 859
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 61.2 bits (147), Expect = 6e-10 Identities = 28/38 (73%), Positives = 30/38 (78%) Frame = -2 Query: 275 PELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 P KNR GP FPY LLYPNTSD KG AAGL+A+GIPN Sbjct: 829 PHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPN 866
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 56.2 bits (134), Expect = 2e-08 Identities = 28/37 (75%), Positives = 28/37 (75%), Gaps = 1/37 (2%) Frame = -2 Query: 269 LKNRNGPAKFPYMLLYPNTSD-HKGAAAGLTAKGIPN 162 LKNRNGP K PYMLLYPNTSD K GLTA GIPN Sbjct: 837 LKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPN 873
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 42.0 bits (97), Expect = 4e-04 Identities = 20/36 (55%), Positives = 25/36 (69%) Frame = -2 Query: 269 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 L+NR GPAK PY LLYP++ + GLT +GIPN Sbjct: 820 LRNRYGPAKMPYTLLYPSSEE------GLTFRGIPN 849
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 41.2 bits (95), Expect = 7e-04 Identities = 19/36 (52%), Positives = 24/36 (66%) Frame = -2 Query: 269 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 L+NR GP K PY LLYP++ + GLT +GIPN Sbjct: 833 LRNRYGPVKMPYTLLYPSSEE------GLTCRGIPN 862
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 40.4 bits (93), Expect = 0.001 Identities = 18/37 (48%), Positives = 26/37 (70%) Frame = -2 Query: 272 ELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 +L+NR+GP + PY LLYP++ + GLT +GIPN Sbjct: 827 KLRNRHGPVEMPYTLLYPSSKE------GLTFRGIPN 857
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 40.0 bits (92), Expect = 0.002 Identities = 19/38 (50%), Positives = 23/38 (60%) Frame = -2 Query: 275 PELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 P L+NR GP + PY LL H+ + GLT KGIPN Sbjct: 829 PSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPN 860
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 40.0 bits (92), Expect = 0.002 Identities = 19/36 (52%), Positives = 22/36 (61%) Frame = -2 Query: 269 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 L+NRNGP K PY +L P D GLT +GIPN Sbjct: 828 LRNRNGPVKMPYTVLLPTCEDE-----GLTFRGIPN 858
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/35 (51%), Positives = 22/35 (62%) Frame = -2 Query: 266 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 KNR+GP PY LL+P + + GLT KGIPN Sbjct: 827 KNRSGPVNVPYTLLFPTSEE------GLTGKGIPN 855
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 37.7 bits (86), Expect = 0.008 Identities = 18/34 (52%), Positives = 23/34 (67%) Frame = -2 Query: 269 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGI 168 L+NR GPAK PY LLYP++ + GLT +GI Sbjct: 714 LRNRTGPAKMPYTLLYPSSEE------GLTFRGI 741
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 37.4 bits (85), Expect = 0.010 Identities = 18/36 (50%), Positives = 22/36 (61%) Frame = -2 Query: 269 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 L NR GP + PY LL+PN+ GLT +GIPN Sbjct: 833 LSNRLGPVQLPYTLLHPNSE-------GLTCRGIPN 861
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 37.0 bits (84), Expect = 0.013 Identities = 18/36 (50%), Positives = 21/36 (58%) Frame = -2 Query: 269 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 L NR+GP PY LL+P + GLT KGIPN Sbjct: 828 LTNRSGPVNAPYTLLFPTSE------GGLTGKGIPN 857
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 36.6 bits (83), Expect = 0.017 Identities = 18/36 (50%), Positives = 20/36 (55%) Frame = -2 Query: 269 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 L NR GP PY LL+P + GLT KGIPN Sbjct: 827 LTNRTGPVNAPYTLLFPTSE------GGLTGKGIPN 856
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 36.2 bits (82), Expect = 0.022 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = -2 Query: 263 NRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 NR GP + PY LLYP++ + GLT +GIPN Sbjct: 808 NRLGPVQLPYTLLYPSSEE------GLTFRGIPN 835
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 35.8 bits (81), Expect = 0.029 Identities = 17/37 (45%), Positives = 24/37 (64%) Frame = -2 Query: 272 ELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 +L+NR GP + PY LL P++ + GLT +GIPN Sbjct: 823 KLRNRCGPVQMPYTLLLPSSKE------GLTFRGIPN 853
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 35.8 bits (81), Expect = 0.029 Identities = 17/38 (44%), Positives = 24/38 (63%) Frame = -2 Query: 275 PELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 P L +R GP + PY LL+P++ + GLT +GIPN Sbjct: 829 PSLYHRVGPVQLPYTLLHPSSKE------GLTFRGIPN 860
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 35.8 bits (81), Expect = 0.029 Identities = 17/36 (47%), Positives = 22/36 (61%) Frame = -2 Query: 269 LKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 LKNR G K PY LL+P++ G+T +GIPN Sbjct: 826 LKNRTGLVKMPYTLLFPSSE------GGVTGRGIPN 855
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 29.6 bits (65), Expect = 2.1 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = -2 Query: 275 PELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 PE KNR G PY LL P + G+T +GIPN Sbjct: 861 PENKNRCGAGIVPYELLKPFSE------PGVTGRGIPN 892
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 29.3 bits (64), Expect = 2.7 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -2 Query: 272 ELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 +LKNR G PY L+ P + AG+T GIPN Sbjct: 907 KLKNRCGAGILPYQLMKPFSD------AGVTGMGIPN 937
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/38 (34%), Positives = 20/38 (52%) Frame = -2 Query: 275 PELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 P +NR G PY L+ P+ + G+T +G+PN Sbjct: 864 PSRRNRCGAGVLPYELMAPS------SGPGITCRGVPN 895
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 28.1 bits (61), Expect = 6.0 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -2 Query: 272 ELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 +LKNR G PY L+ P + +G+T GIPN Sbjct: 890 KLKNRCGAGILPYQLMKPFSD------SGVTGMGIPN 920
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 275 PELKNRNGPAKFPYMLLYPNTSD 207 P+ KNR+G PY+LL P+ D Sbjct: 891 PDRKNRHGAGMVPYVLLRPSDGD 913
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = -1 Query: 276 PGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQH 157 PGA E +RPG P+ R +GRR ++R+G P +H Sbjct: 1074 PGAWEGRRPGDERFPRD-PEDPRFRGRREESFRRGAPPRH 1112
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/45 (35%), Positives = 17/45 (37%) Frame = -1 Query: 282 PLPGAQEPQRPG*VSLHAALPQHLRPQGRRCRAYRQGHPQQHLHL 148 P P P RP + H PQH P HPQQH L Sbjct: 378 PQPSPHTPHRPHGLPQHPQRPQHPAP-----------HPQQHSQL 411
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 27.7 bits (60), Expect = 7.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -2 Query: 266 KNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPN 162 KNR G PY LL P+ + G+T +G+PN Sbjct: 886 KNRCGAGVLPYELLAPS------SPPGVTCRGVPN 914 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,549,708 Number of Sequences: 219361 Number of extensions: 636477 Number of successful extensions: 1363 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1334 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1353 length of database: 80,573,946 effective HSP length: 70 effective length of database: 65,218,676 effective search space used: 1565248224 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
