ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24d03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.67
2dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.67
3dbj|AK109602.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.67
4gb|AC163325.7| Mus musculus chromosome 1, clone RP23-76L21, comp... 40 2.6
5gb|AY591682.1| Mus musculus clone IgK8-27 immunoglobulin kappa-l... 40 2.6
6gb|AC159715.5| Mus musculus 6 BAC RP23-367A13 (Roswell Park Canc... 40 2.6
7emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2-17h8... 40 2.6
8gb|AC141923.27| Medicago truncatula clone mth2-7f19, complete se... 40 2.6
9gb|AC155332.10| Mus musculus 6 BAC RP24-140J8 (Roswell Park Canc... 40 2.6
10emb|BX323543.11| Zebrafish DNA sequence from clone DKEYP-67E1 in... 40 2.6
11gb|AC103792.2| Homo sapiens chromosome 11, clone CTD-2384B9, com... 40 2.6
12gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, compl... 40 2.6
13gb|AC119156.9| Mus musculus chromosome 1, clone RP24-534J20, com... 40 2.6
14gb|AC091903.2| Homo sapiens chromosome 5 clone RP11-182I21, comp... 40 2.6
15gb|AC158672.6| Mus musculus 6 BAC RP23-64J23 (Roswell Park Cance... 40 2.6
16emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in l... 40 2.6
17emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-5... 40 2.6
18gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 2.6 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 184     actttcaccttcttgctgttggctt 208
               |||||||||||||||||||| ||||
Sbjct: 3070723 actttcaccttcttgctgttagctt 3070699
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>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1178_D01
          Length = 121768

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 184   actttcaccttcttgctgttggctt 208
             |||||||||||||||||||| ||||
Sbjct: 90689 actttcaccttcttgctgttagctt 90665
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>dbj|AK109602.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E09, full
            insert sequence
          Length = 2854

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 184  actttcaccttcttgctgttggctt 208
            |||||||||||||||||||| ||||
Sbjct: 2634 actttcaccttcttgctgttagctt 2610
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>gb|AC163325.7| Mus musculus chromosome 1, clone RP23-76L21, complete sequence
          Length = 253153

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    agactacaaagtaaactcag 55
             ||||||||||||||||||||
Sbjct: 28940 agactacaaagtaaactcag 28921
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>gb|AY591682.1| Mus musculus clone IgK8-27 immunoglobulin kappa-like gene, partial
            sequence
          Length = 2901

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 162  aatgacaagaaaaaacaatt 181
            ||||||||||||||||||||
Sbjct: 2792 aatgacaagaaaaaacaatt 2773
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>gb|AC159715.5| Mus musculus 6 BAC RP23-367A13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209869

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    aatgacaagaaaaaacaatt 181
              ||||||||||||||||||||
Sbjct: 190288 aatgacaagaaaaaacaatt 190307
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>emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2-17h8, COMPLETE SEQUENCE
          Length = 114811

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 75   ccaaaattttaaggggaaag 94
            ||||||||||||||||||||
Sbjct: 9305 ccaaaattttaaggggaaag 9324
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>gb|AC141923.27| Medicago truncatula clone mth2-7f19, complete sequence
          Length = 116685

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    ccaaaattttaaggggaaag 94
             ||||||||||||||||||||
Sbjct: 11786 ccaaaattttaaggggaaag 11767
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>gb|AC155332.10| Mus musculus 6 BAC RP24-140J8 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202181

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    aatgacaagaaaaaacaatt 181
              ||||||||||||||||||||
Sbjct: 107295 aatgacaagaaaaaacaatt 107314
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>emb|BX323543.11| Zebrafish DNA sequence from clone DKEYP-67E1 in linkage group 25,
              complete sequence
          Length = 181520

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    caggtccaaatgacaagaaa 173
              ||||||||||||||||||||
Sbjct: 141185 caggtccaaatgacaagaaa 141166
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>gb|AC103792.2| Homo sapiens chromosome 11, clone CTD-2384B9, complete sequence
          Length = 115626

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    acaaagtaaactcaggagct 60
             ||||||||||||||||||||
Sbjct: 43585 acaaagtaaactcaggagct 43566
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>gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, complete sequence
          Length = 126394

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  caaatgacaagaaaaaacaa 179
            ||||||||||||||||||||
Sbjct: 1024 caaatgacaagaaaaaacaa 1005
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>gb|AC119156.9| Mus musculus chromosome 1, clone RP24-534J20, complete sequence
          Length = 185873

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    agactacaaagtaaactcag 55
             ||||||||||||||||||||
Sbjct: 64974 agactacaaagtaaactcag 64955
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>gb|AC091903.2| Homo sapiens chromosome 5 clone RP11-182I21, complete sequence
          Length = 194860

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   caaatgacaagaaaaaacaa 179
             ||||||||||||||||||||
Sbjct: 53535 caaatgacaagaaaaaacaa 53554
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>gb|AC158672.6| Mus musculus 6 BAC RP23-64J23 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 216954

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  aatgacaagaaaaaacaatt 181
            ||||||||||||||||||||
Sbjct: 1310 aatgacaagaaaaaacaatt 1329
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>emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in linkage group 1,
             complete sequence
          Length = 209946

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   aaatgacaagaaaaaacaat 180
             ||||||||||||||||||||
Sbjct: 70661 aaatgacaagaaaaaacaat 70680
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>emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-550M19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175725

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    atgacaagaaaaaacaatta 182
              ||||||||||||||||||||
Sbjct: 137047 atgacaagaaaaaacaatta 137066
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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 169    agaaaaaacaattatacttt 188
              ||||||||||||||||||||
Sbjct: 767198 agaaaaaacaattatacttt 767217


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,727,404
Number of Sequences: 3902068
Number of extensions: 2727404
Number of successful extensions: 245571
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 245420
Number of HSP's gapped (non-prelim): 151
length of query: 208
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 186
effective length of database: 17,147,199,772
effective search space: 3189379157592
effective search space used: 3189379157592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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