ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ADRL_CAEEL (Q94177) ADIPOR-like receptor C43G2.1 28 5.2
2L_SENDZ (P06447) Large structural protein (Protein L) (Transcrip... 28 6.7
3L_SENDF (Q06996) Large structural protein (Protein L) (Transcrip... 28 6.7
4L_SENDE (P06829) Large structural protein (Protein L) (Transcrip... 28 6.7
5L_SENDA (Q9DUD8) Large structural protein (Protein L) (Transcrip... 28 6.7
6CAPZB_SCHPO (Q9HGP5) Probable F-actin capping protein beta subunit 28 6.7

>ADRL_CAEEL (Q94177) ADIPOR-like receptor C43G2.1|
          Length = 434

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 154 CHSLLIIKIYLYFTQCPLLKICVLLFLVGYGIEPTYVGLYC 32
           CHS+ ++KI+     C L  + + L ++G  I   Y G YC
Sbjct: 259 CHSVNVVKIF-----CKLDYMGISLLIIGSFIPWIYYGFYC 294



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>L_SENDZ (P06447) Large structural protein (Protein L) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2228

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 151 HSLLIIKIYLYFTQCPLLKICVLLFLVGYGIEPTYVGLYC 32
           H+LL  K Y   T   L+ I   L L GY + P  V +YC
Sbjct: 201 HNLLECKSYTLVTYGDLVMILNKLTLTGYILTPELVLMYC 240



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>L_SENDF (Q06996) Large structural protein (Protein L) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2228

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 151 HSLLIIKIYLYFTQCPLLKICVLLFLVGYGIEPTYVGLYC 32
           H+LL  K Y   T   L+ I   L L GY + P  V +YC
Sbjct: 201 HNLLECKSYTLVTYGDLVMILNKLTLTGYILTPELVLMYC 240



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>L_SENDE (P06829) Large structural protein (Protein L) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2228

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 151 HSLLIIKIYLYFTQCPLLKICVLLFLVGYGIEPTYVGLYC 32
           H+LL  K Y   T   L+ I   L L GY + P  V +YC
Sbjct: 201 HNLLECKSYTLVTYGDLVMILNKLTLTGYILTPELVLMYC 240



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>L_SENDA (Q9DUD8) Large structural protein (Protein L) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2228

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 151 HSLLIIKIYLYFTQCPLLKICVLLFLVGYGIEPTYVGLYC 32
           H+LL  K Y   T   L+ I   L L GY + P  V +YC
Sbjct: 201 HNLLECKSYTLVTYGDLVMILNKLTLTGYILTPELVLMYC 240



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>CAPZB_SCHPO (Q9HGP5) Probable F-actin capping protein beta subunit|
          Length = 268

 Score = 28.1 bits (61), Expect = 6.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 8   TKSTQPVSTVQPNISGLNAIAN 73
           T+S QPVS  QPN S L ++ N
Sbjct: 243 TRSIQPVSDAQPNDSALRSVLN 264


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,446,600
Number of Sequences: 219361
Number of extensions: 336479
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 80,573,946
effective HSP length: 35
effective length of database: 72,896,311
effective search space used: 1749511464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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