ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EBM_LILLO (Q5H7P5) Mannosylglycoprotein endo-beta-mannosidase (E... 29 3.9
2PCX_DROME (P18490) Protein pecanex 28 6.6

>EBM_LILLO (Q5H7P5) Mannosylglycoprotein endo-beta-mannosidase (EC 3.2.1.152)|
           (Endo-beta-mannosidase) [Contains: Mannosylglycoprotein
           endo-beta-mannosidase 31 kDa subunit;
           Mannosylglycoprotein endo-beta-mannosidase 28 kDa
           subunit; Mannosylglycoprotein end
          Length = 952

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -2

Query: 203 EAPEGSKPRVILRGWNYHLNH 141
           E P G  PRV LRGWN    H
Sbjct: 928 EVPHGVTPRVSLRGWNCSEEH 948



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>PCX_DROME (P18490) Protein pecanex|
          Length = 3433

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 24  LLVYKIAKPFMSALYWGCTYFTWILF 101
           L +Y +  PF++ LY+  T+ TW L+
Sbjct: 38  LWLYLLCSPFVAYLYFPSTWLTWCLY 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,265,179
Number of Sequences: 219361
Number of extensions: 457916
Number of successful extensions: 823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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