Clone Name | rbastl24c10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01, complete sequence Length = 164709 Score = 60.0 bits (30), Expect = 3e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 139 gcatggttcagatgatagttccagcctctcaaaatgaccctgggcttggatccttcgggt 198 ||||||| ||| ||||||||||||||| ||| |||||||||||| ||||||| | ||| Sbjct: 42054 gcatggtccaggtgatagttccagcctttcagaatgaccctgggggtggatccctggggg 41995 Query: 199 gcctcg 204 |||||| Sbjct: 41994 gcctcg 41989
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 3e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 139 gcatggttcagatgatagttccagcctctcaaaatgaccctgggcttggatccttcgggt 198 ||||||| ||| ||||||||||||||| ||| |||||||||||| ||||||| | ||| Sbjct: 18874676 gcatggtccaggtgatagttccagcctttcagaatgaccctgggggtggatccctggggg 18874617 Query: 199 gcctcg 204 |||||| Sbjct: 18874616 gcctcg 18874611
>dbj|AK119412.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F10, full insert sequence Length = 3621 Score = 60.0 bits (30), Expect = 3e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 139 gcatggttcagatgatagttccagcctctcaaaatgaccctgggcttggatccttcgggt 198 ||||||| ||| ||||||||||||||| ||| |||||||||||| ||||||| | ||| Sbjct: 3072 gcatggtccaggtgatagttccagcctttcagaatgaccctgggggtggatccctggggg 3013 Query: 199 gcctcg 204 |||||| Sbjct: 3012 gcctcg 3007
>gb|AC026179.5|AC026179 Homo sapiens chromosome 3 clone RP11-264H3 map 3p, complete sequence Length = 166488 Score = 42.1 bits (21), Expect = 0.65 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 atgtacttactttacatggat 94 ||||||||||||||||||||| Sbjct: 152625 atgtacttactttacatggat 152605
>gb|AC066584.6|AC066584 Homo sapiens chromosome 3 clone RP11-244G3 map 3p, complete sequence Length = 155825 Score = 42.1 bits (21), Expect = 0.65 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 atgtacttactttacatggat 94 ||||||||||||||||||||| Sbjct: 76775 atgtacttactttacatggat 76755
>gb|AC018493.6|AC018493 Homo sapiens chromosome 3 clone RP11-163M22 map 3p, complete sequence Length = 180299 Score = 42.1 bits (21), Expect = 0.65 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 atgtacttactttacatggat 94 ||||||||||||||||||||| Sbjct: 171146 atgtacttactttacatggat 171166
>gb|AC011327.17|AC011327 Homo sapiens 3 BAC RP11-77I5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168812 Score = 42.1 bits (21), Expect = 0.65 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 atgtacttactttacatggat 94 ||||||||||||||||||||| Sbjct: 159653 atgtacttactttacatggat 159673
>emb|AL935264.12| Mouse DNA sequence from clone RP23-118A9 on chromosome 4, complete sequence Length = 230886 Score = 42.1 bits (21), Expect = 0.65 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 ctgcactttattggggatgta 78 ||||||||||||||||||||| Sbjct: 26959 ctgcactttattggggatgta 26939
>gb|AC023485.6| Homo sapiens chromosome 3 clone RP11-489D19 map 3p, complete sequence Length = 179304 Score = 42.1 bits (21), Expect = 0.65 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 atgtacttactttacatggat 94 ||||||||||||||||||||| Sbjct: 100248 atgtacttactttacatggat 100228
>gb|AY633104.1| Cicurina pallida haplotype TX365 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 984 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tactttacatggatcttatt 100 |||||||||||||||||||| Sbjct: 678 tactttacatggatcttatt 697
>gb|AY633103.1| Cicurina pallida haplotype TX363 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 966 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tactttacatggatcttatt 100 |||||||||||||||||||| Sbjct: 660 tactttacatggatcttatt 679
>gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome 3, complete sequence Length = 190178 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 gcactttattggggatgtacttac 83 |||||| ||||||||||||||||| Sbjct: 91501 gcacttaattggggatgtacttac 91524
>gb|AC152414.7| Mus musculus BAC clone RP23-358O14 from chromosome 10, complete sequence Length = 230322 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 atagttccagcctctcaaaa 172 |||||||||||||||||||| Sbjct: 532 atagttccagcctctcaaaa 551
>gb|AC163212.3| Mus musculus chromosome 3, clone RP24-102O2, complete sequence Length = 199319 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 60 gcactttattggggatgtacttac 83 |||||| ||||||||||||||||| Sbjct: 61943 gcacttaattggggatgtacttac 61966
>gb|AC152411.5| Mus musculus BAC clone RP24-87M19 from chromosome 10, complete sequence Length = 204973 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 atagttccagcctctcaaaa 172 |||||||||||||||||||| Sbjct: 99907 atagttccagcctctcaaaa 99888
>gb|DQ174430.1| Diaea sp. JEG-696 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tactttacatggatcttatt 100 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174429.1| Diaea sp. JEG-697 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tactttacatggatcttatt 100 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174399.1| Diaea sp. JEG-692 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tactttacatggatcttatt 100 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174374.1| Misumenops melloleitaio isolate 368 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 820 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tactttacatggatcttatt 100 |||||||||||||||||||| Sbjct: 774 tactttacatggatcttatt 793
>gb|DQ174373.1| Misumenops melloleitaio isolate 484 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 819 Score = 40.1 bits (20), Expect = 2.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tactttacatggatcttatt 100 |||||||||||||||||||| Sbjct: 773 tactttacatggatcttatt 792 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,597,955 Number of Sequences: 3902068 Number of extensions: 1597955 Number of successful extensions: 109329 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109273 Number of HSP's gapped (non-prelim): 56 length of query: 204 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 182 effective length of database: 17,147,199,772 effective search space: 3120790358504 effective search space used: 3120790358504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)