ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25 28 7.8
2ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disinteg... 28 7.8
3PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosp... 28 7.8

>CWC25_YARLI (Q6C1V6) Pre-mRNA-splicing factor CWC25|
          Length = 561

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
 Frame = +2

Query: 26  LTQKQRKQRSLQRPN*RSQQCLRFA----KKKKNNGGPEGTSHHRLHYWAKQ------GI 175
           +T+  R +R+  RP  + +   RFA    K+K+ N  P+G    R    A +      G 
Sbjct: 405 VTRSHRDKRNSYRPEYKDEDDKRFAQRKDKEKEMNALPKGLQQMRAKLLASKKTTTVSGT 464

Query: 176 FSAHDDALTGSQLS*ASACRSDPS 247
                 A +GSQ + ++A  S P+
Sbjct: 465 SQTPTSAPSGSQRTPSAASGSSPT 488



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>ADA33_MOUSE (Q923W9) ADAM 33 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 33)
          Length = 797

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
 Frame = -2

Query: 224 KLSSAGYRSMHRRVQKKSLVLPNNEVDGVMFPPALRCFSSSWQT-------SGIVVI 75
           KL + GY   H R     +VL  N  D   +   +R F  SW         SG++V+
Sbjct: 87  KLLAPGYTETHYRPDGHPVVLSPNHTDHCQYHGRVRGFRESWVVLSTCSGMSGLIVL 143



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>PLCG1_RAT (P10686) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           gamma 1 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (PLC-gamma-1) (Phospholipase C-gamma-1) (PLC-II)
           (PLC-148)
          Length = 1290

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 125 PEGTSHHRLHYWAKQGIFSAHDDALTGSQLS*ASACRSDPSCTHPYC 265
           PE  ++   HYW    I S+H+  LTG Q S  S+  +   C    C
Sbjct: 319 PETMNNPLSHYW----ISSSHNTYLTGDQFSSESSLEAYARCLRMGC 361


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,514,855
Number of Sequences: 219361
Number of extensions: 859312
Number of successful extensions: 2087
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2086
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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