Clone Name | rbastl24c04 |
---|---|
Clone Library Name | barley_pub |
>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 (SLC25A5) (ANT2) pseudogene, complete sequence Length = 166664 Score = 40.1 bits (20), Expect = 1.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 83 tttacaacacagcgaaaacgaacaaata 110 |||||| ||||| ||||||||||||||| Sbjct: 20150 tttacagcacagtgaaaacgaacaaata 20177
>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence Length = 124602 Score = 40.1 bits (20), Expect = 1.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tcttatcaaagtcgaaaaca 25 |||||||||||||||||||| Sbjct: 118575 tcttatcaaagtcgaaaaca 118594
>gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, complete sequence Length = 212494 Score = 38.2 bits (19), Expect = 6.7 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Minus Query: 35 aatgttgct-acaaacacttgcagagg 60 ||||||||| ||||||||||||||||| Sbjct: 87589 aatgttgctcacaaacacttgcagagg 87563
>gb|AC119908.16| Mus musculus chromosome 7, clone RP24-240G4, complete sequence Length = 190369 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 43 tacaaacacttgcagagga 61 ||||||||||||||||||| Sbjct: 49946 tacaaacacttgcagagga 49928
>gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, complete sequence Length = 256720 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 ccaacggtttacaacacag 94 ||||||||||||||||||| Sbjct: 8562 ccaacggtttacaacacag 8544
>ref|XM_759648.1| Theileria parva strain Muguga importin beta-related nuclear transport factor (TP02_0177) partial mRNA Length = 3204 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 gtcgaaaacagagaaacgg 34 ||||||||||||||||||| Sbjct: 115 gtcgaaaacagagaaacgg 133
>emb|Z49770.1|SC9335 S.cerevisiae chromosome IV cosmid 9335 Length = 10951 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 aaaacgaacaaataaaaca 115 ||||||||||||||||||| Sbjct: 2628 aaaacgaacaaataaaaca 2610
>emb|X95966.1|SC354CHIV S.cerevisiae 35.4kb DNA region on left arm of chromosome IV Length = 35452 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 aaaacgaacaaataaaaca 115 ||||||||||||||||||| Sbjct: 17197 aaaacgaacaaataaaaca 17179
>gb|AC084262.6| Homo sapiens chromosome 8, clone RP4-676L2, complete sequence Length = 127199 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 aataaaacaggatgtacac 125 ||||||||||||||||||| Sbjct: 91712 aataaaacaggatgtacac 91694
>gb|AC114296.2| Homo sapiens chromosome 5 clone RP11-119J18, complete sequence Length = 39450 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 aataaaacaggatgtacac 125 ||||||||||||||||||| Sbjct: 37764 aataaaacaggatgtacac 37782
>gb|AC024678.10| Homo sapiens chromosome 8, clone RP11-564K10, complete sequence Length = 170788 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 aataaaacaggatgtacac 125 ||||||||||||||||||| Sbjct: 161848 aataaaacaggatgtacac 161866
>gb|AC105081.4| Homo sapiens chromosome 8, clone CTC-788C1, complete sequence Length = 158605 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 aaaacgaacaaataaaaca 115 ||||||||||||||||||| Sbjct: 60256 aaaacgaacaaataaaaca 60274
>gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, complete sequence Length = 243771 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 ccaacggtttacaacacag 94 ||||||||||||||||||| Sbjct: 183509 ccaacggtttacaacacag 183491
>gb|U53466.2|U53466 Cydia pomonella granulovirus, complete genome Length = 123500 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 gccaacggtttacaacaca 93 ||||||||||||||||||| Sbjct: 92012 gccaacggtttacaacaca 92030
>gb|S81651.1| centromeric: KCS1=putative basic leucine zipper protein [Saccharomyces cerevisiae, Genomic, 3542 nt] Length = 3542 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 aaaacgaacaaataaaaca 115 ||||||||||||||||||| Sbjct: 2049 aaaacgaacaaataaaaca 2067
>gb|AC008319.4|AC008319 Drosophila melanogaster, chromosome 2L, region 21E-22A, BAC clone BACR38A03, complete sequence Length = 189315 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 90 cacagcgaaaacgaacaaataaa 112 ||||||||||||||||| ||||| Sbjct: 161764 cacagcgaaaacgaacacataaa 161742
>gb|AC127383.4| Homo sapiens BAC clone RP11-1388F24 from 2, complete sequence Length = 122168 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 aaaacgaacaaataaaaca 115 ||||||||||||||||||| Sbjct: 113613 aaaacgaacaaataaaaca 113631
>gb|AC010739.3| Homo sapiens BAC clone RP11-478M12 from 2, complete sequence Length = 180226 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 96 gaaaacgaacaaataaaac 114 ||||||||||||||||||| Sbjct: 78943 gaaaacgaacaaataaaac 78925
>gb|AC010881.8| Homo sapiens BAC clone RP11-289J14 from 2, complete sequence Length = 174927 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 97 aaaacgaacaaataaaaca 115 ||||||||||||||||||| Sbjct: 68941 aaaacgaacaaataaaaca 68959
>gb|AC011431.4| Homo sapiens chromosome 5 clone XXp1-803E8, complete sequence Length = 86667 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 aataaaacaggatgtacac 125 ||||||||||||||||||| Sbjct: 73046 aataaaacaggatgtacac 73028
>emb|Z74313.1|SCYDR017C S.cerevisiae chromosome IV reading frame ORF YDR017c Length = 3911 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 aaaacgaacaaataaaaca 115 ||||||||||||||||||| Sbjct: 1546 aaaacgaacaaataaaaca 1528
>gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 of 83 of the complete sequence Length = 314549 Score = 38.2 bits (19), Expect = 6.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 90 cacagcgaaaacgaacaaataaa 112 ||||||||||||||||| ||||| Sbjct: 233928 cacagcgaaaacgaacacataaa 233950
>dbj|AP003351.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1184D12 Length = 176854 Score = 38.2 bits (19), Expect = 6.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 aaaacgaacaaataaaaca 115 ||||||||||||||||||| Sbjct: 54476 aaaacgaacaaataaaaca 54458 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,238,423 Number of Sequences: 3902068 Number of extensions: 1238423 Number of successful extensions: 90494 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 90442 Number of HSP's gapped (non-prelim): 53 length of query: 141 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 120 effective length of database: 17,151,101,840 effective search space: 2058132220800 effective search space used: 2058132220800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)