ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on ch... 40 1.7
2dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0... 40 1.7
3gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, com... 38 6.7
4gb|AC119908.16| Mus musculus chromosome 7, clone RP24-240G4, com... 38 6.7
5gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, c... 38 6.7
6ref|XM_759648.1| Theileria parva strain Muguga importin beta-rel... 38 6.7
7emb|Z49770.1|SC9335 S.cerevisiae chromosome IV cosmid 9335 38 6.7
8emb|X95966.1|SC354CHIV S.cerevisiae 35.4kb DNA region on left ar... 38 6.7
9gb|AC084262.6| Homo sapiens chromosome 8, clone RP4-676L2, compl... 38 6.7
10gb|AC114296.2| Homo sapiens chromosome 5 clone RP11-119J18, comp... 38 6.7
11gb|AC024678.10| Homo sapiens chromosome 8, clone RP11-564K10, co... 38 6.7
12gb|AC105081.4| Homo sapiens chromosome 8, clone CTC-788C1, compl... 38 6.7
13gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, com... 38 6.7
14gb|U53466.2|U53466 Cydia pomonella granulovirus, complete genome 38 6.7
15gb|S81651.1| centromeric: KCS1=putative basic leucine zipper pro... 38 6.7
16gb|AC008319.4|AC008319 Drosophila melanogaster, chromosome 2L, r... 38 6.7
17gb|AC127383.4| Homo sapiens BAC clone RP11-1388F24 from 2, compl... 38 6.7
18gb|AC010739.3| Homo sapiens BAC clone RP11-478M12 from 2, comple... 38 6.7
19gb|AC010881.8| Homo sapiens BAC clone RP11-289J14 from 2, comple... 38 6.7
20gb|AC011431.4| Homo sapiens chromosome 5 clone XXp1-803E8, compl... 38 6.7
21emb|Z74313.1|SCYDR017C S.cerevisiae chromosome IV reading frame ... 38 6.7
22gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 ... 38 6.7
23dbj|AP003351.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 6.7

>emb|AL353573.10| Human DNA sequence from clone RP11-550E18 on chromosome 9 Contains a
             solute carrier family 25 (mitochondrial carrier; adenine
             nucleotide translocator), member 5 (SLC25A5) (ANT2)
             pseudogene, complete sequence
          Length = 166664

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 83    tttacaacacagcgaaaacgaacaaata 110
             |||||| ||||| |||||||||||||||
Sbjct: 20150 tttacagcacagtgaaaacgaacaaata 20177



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>dbj|AP007294.1| Lotus japonicus genomic DNA, clone:LjT42E17, TM0355, complete sequence
          Length = 124602

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      tcttatcaaagtcgaaaaca 25
              ||||||||||||||||||||
Sbjct: 118575 tcttatcaaagtcgaaaaca 118594



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>gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, complete sequence
          Length = 212494

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 26/27 (96%), Gaps = 1/27 (3%)
 Strand = Plus / Minus

                                        
Query: 35    aatgttgct-acaaacacttgcagagg 60
             ||||||||| |||||||||||||||||
Sbjct: 87589 aatgttgctcacaaacacttgcagagg 87563



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>gb|AC119908.16| Mus musculus chromosome 7, clone RP24-240G4, complete sequence
          Length = 190369

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    tacaaacacttgcagagga 61
             |||||||||||||||||||
Sbjct: 49946 tacaaacacttgcagagga 49928



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>gb|AC110241.17| Mus musculus chromosome 16, clone RP23-129F22, complete sequence
          Length = 256720

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 76   ccaacggtttacaacacag 94
            |||||||||||||||||||
Sbjct: 8562 ccaacggtttacaacacag 8544



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>ref|XM_759648.1| Theileria parva strain Muguga importin beta-related nuclear
           transport factor (TP02_0177) partial mRNA
          Length = 3204

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 16  gtcgaaaacagagaaacgg 34
           |||||||||||||||||||
Sbjct: 115 gtcgaaaacagagaaacgg 133



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>emb|Z49770.1|SC9335 S.cerevisiae chromosome IV cosmid 9335
          Length = 10951

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 97   aaaacgaacaaataaaaca 115
            |||||||||||||||||||
Sbjct: 2628 aaaacgaacaaataaaaca 2610



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>emb|X95966.1|SC354CHIV S.cerevisiae 35.4kb DNA region on left arm of chromosome IV
          Length = 35452

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    aaaacgaacaaataaaaca 115
             |||||||||||||||||||
Sbjct: 17197 aaaacgaacaaataaaaca 17179



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>gb|AC084262.6| Homo sapiens chromosome 8, clone RP4-676L2, complete sequence
          Length = 127199

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 107   aataaaacaggatgtacac 125
             |||||||||||||||||||
Sbjct: 91712 aataaaacaggatgtacac 91694



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>gb|AC114296.2| Homo sapiens chromosome 5 clone RP11-119J18, complete sequence
          Length = 39450

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 107   aataaaacaggatgtacac 125
             |||||||||||||||||||
Sbjct: 37764 aataaaacaggatgtacac 37782



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>gb|AC024678.10| Homo sapiens chromosome 8, clone RP11-564K10, complete sequence
          Length = 170788

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 107    aataaaacaggatgtacac 125
              |||||||||||||||||||
Sbjct: 161848 aataaaacaggatgtacac 161866



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>gb|AC105081.4| Homo sapiens chromosome 8, clone CTC-788C1, complete sequence
          Length = 158605

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    aaaacgaacaaataaaaca 115
             |||||||||||||||||||
Sbjct: 60256 aaaacgaacaaataaaaca 60274



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>gb|AC093479.13| Mus musculus chromosome 16, clone RP23-61K2, complete sequence
          Length = 243771

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 76     ccaacggtttacaacacag 94
              |||||||||||||||||||
Sbjct: 183509 ccaacggtttacaacacag 183491



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>gb|U53466.2|U53466 Cydia pomonella granulovirus, complete genome
          Length = 123500

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 75    gccaacggtttacaacaca 93
             |||||||||||||||||||
Sbjct: 92012 gccaacggtttacaacaca 92030



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>gb|S81651.1| centromeric: KCS1=putative basic leucine zipper protein
            [Saccharomyces cerevisiae, Genomic, 3542 nt]
          Length = 3542

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 97   aaaacgaacaaataaaaca 115
            |||||||||||||||||||
Sbjct: 2049 aaaacgaacaaataaaaca 2067



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>gb|AC008319.4|AC008319 Drosophila melanogaster, chromosome 2L, region 21E-22A, BAC clone
              BACR38A03, complete sequence
          Length = 189315

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 90     cacagcgaaaacgaacaaataaa 112
              ||||||||||||||||| |||||
Sbjct: 161764 cacagcgaaaacgaacacataaa 161742



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>gb|AC127383.4| Homo sapiens BAC clone RP11-1388F24 from 2, complete sequence
          Length = 122168

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 97     aaaacgaacaaataaaaca 115
              |||||||||||||||||||
Sbjct: 113613 aaaacgaacaaataaaaca 113631



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>gb|AC010739.3| Homo sapiens BAC clone RP11-478M12 from 2, complete sequence
          Length = 180226

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 96    gaaaacgaacaaataaaac 114
             |||||||||||||||||||
Sbjct: 78943 gaaaacgaacaaataaaac 78925



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>gb|AC010881.8| Homo sapiens BAC clone RP11-289J14 from 2, complete sequence
          Length = 174927

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    aaaacgaacaaataaaaca 115
             |||||||||||||||||||
Sbjct: 68941 aaaacgaacaaataaaaca 68959



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>gb|AC011431.4| Homo sapiens chromosome 5 clone XXp1-803E8, complete sequence
          Length = 86667

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 107   aataaaacaggatgtacac 125
             |||||||||||||||||||
Sbjct: 73046 aataaaacaggatgtacac 73028



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>emb|Z74313.1|SCYDR017C S.cerevisiae chromosome IV reading frame ORF YDR017c
          Length = 3911

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 97   aaaacgaacaaataaaaca 115
            |||||||||||||||||||
Sbjct: 1546 aaaacgaacaaataaaaca 1528



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>gb|AE003587.4| Drosophila melanogaster chromosome 2L, section 4 of 83 of the complete
              sequence
          Length = 314549

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 90     cacagcgaaaacgaacaaataaa 112
              ||||||||||||||||| |||||
Sbjct: 233928 cacagcgaaaacgaacacataaa 233950



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>dbj|AP003351.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1184D12
          Length = 176854

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    aaaacgaacaaataaaaca 115
             |||||||||||||||||||
Sbjct: 54476 aaaacgaacaaataaaaca 54458


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,238,423
Number of Sequences: 3902068
Number of extensions: 1238423
Number of successful extensions: 90494
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 90442
Number of HSP's gapped (non-prelim): 53
length of query: 141
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 120
effective length of database: 17,151,101,840
effective search space: 2058132220800
effective search space used: 2058132220800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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