Clone Name | rbastl24c02 |
---|---|
Clone Library Name | barley_pub |
>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)| Length = 942 Score = 67.0 bits (162), Expect = 1e-11 Identities = 29/44 (65%), Positives = 36/44 (81%) Frame = -3 Query: 338 RLLLEDFAALPLNEVDGSKATEMVAKLKSDFEKDAASNPWLHQF 207 RL LE+FAALP++E+DGSK EM K+K+D +KDAA NPWL QF Sbjct: 898 RLFLEEFAALPMDEMDGSKILEMATKMKADLQKDAADNPWLQQF 941
>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)| Length = 937 Score = 42.0 bits (97), Expect = 4e-04 Identities = 18/42 (42%), Positives = 30/42 (71%) Frame = -3 Query: 329 LEDFAALPLNEVDGSKATEMVAKLKSDFEKDAASNPWLHQFL 204 L++FAA+PL++++ + + V ++K + EKDAA WL QFL Sbjct: 896 LKEFAAIPLDKMELKDSLQRVREMKDELEKDAADCHWLRQFL 937
>LMD1_HUMAN (P29536) Leiomodin-1 (Leiomodin, muscle form) (64 kDa autoantigen| D1) (64 kDa autoantigen 1D) (64 kDa autoantigen 1D3) (Thyroid-associated ophthalmopathy autoantigen) (Smooth muscle leiomodin) (SM-Lmod) Length = 572 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 146 DDPFLFLVQVNRNDCLLNSLLNPFVSASKQKRVSTKF*LSAT 21 +DP + V VN +DC+ N +L F A + V F L+ T Sbjct: 300 NDPEMTEVNVNNSDCITNEILVRFTEALEFNTVVKLFALANT 341
>ZBTB3_HUMAN (Q9H5J0) Zinc finger and BTB domain-containing protein 3| Length = 574 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Frame = -1 Query: 256 NQTSRKTQPVIPGYTSSSEWNGKEW--IADPSVTAR 155 + TSR TQP + +S W EW A PS T R Sbjct: 197 SSTSRGTQPSLASAETSGHWGKGEWKGSAAPSPTVR 232
>RFCL_METTH (O26342) Replication factor C large subunit (RFC large subunit)| (Clamp loader large subunit) (mthRFC large subunit) Length = 479 Score = 27.7 bits (60), Expect = 7.4 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = +2 Query: 74 QKDLVENLVDNRFCLLALRKGKDRPKLTRSNRRISDPFLSIPFRGTGVARDY 229 +KD NL D + A+ K +D K+ + R DP L + F V R+Y Sbjct: 220 EKDATSNLFD---AVRAVLKSRDVSKVREAMRVDDDPTLVLEFIAENVPREY 268
>PNCB_METAC (Q8TMW6) Nicotinate phosphoribosyltransferase (EC 2.4.2.11)| (NAPRTase) Length = 404 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 214 TSSSEWNGKEWIADPSVTARQLGT 143 T EWNGKEW + S T+ + T Sbjct: 133 TIEKEWNGKEWDGNISATSESILT 156 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,385,812 Number of Sequences: 219361 Number of extensions: 655800 Number of successful extensions: 1575 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1555 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1575 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)