ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC087747.1| Xenopus tropicalis cDNA clone IMAGE:6997995 44 0.28
2gb|AC129146.3| Rattus norvegicus 2 BAC CH230-266D19 (Children's ... 42 1.1
3gb|AC164163.2| Mus musculus BAC clone RP23-243L21 from chromosom... 42 1.1
4emb|BX936412.46| Zebrafish DNA sequence from clone DKEY-235H13, ... 42 1.1
5emb|CT030235.12| Mouse DNA sequence from clone RP23-240F19 on ch... 42 1.1
6gb|AC151369.4| Aotus nancymaae clone CH258-279B4, complete sequence 40 4.4
7gb|AC109460.3| Homo sapiens chromosome 16 clone RP11-264B17, com... 40 4.4
8gb|AC125278.1| Mus musculus BAC clone RP24-481N2 from 12, comple... 40 4.4
9emb|AL591604.6| Human DNA sequence from clone RP11-356F4 on chro... 40 4.4
10emb|CR759959.15| Zebrafish DNA sequence from clone DKEY-253H15 i... 40 4.4
11gb|AC112166.3| Homo sapiens chromosome 16 clone CTB-134H23, comp... 40 4.4
12gb|AC107877.4| Homo sapiens chromosome 8, clone RP11-74P9, compl... 40 4.4
13gb|AC026956.20| Homo sapiens chromosome 15, clone RP11-597K23, c... 40 4.4
14gb|AC026624.8| Homo sapiens chromosome 15, clone RP11-652P10, co... 40 4.4
15gb|AF002525.1|AF002525 Pterolebias xiphophorus 16S ribosomal RNA... 40 4.4
16dbj|AP005364.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 4.4
17dbj|AP003789.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 4.4

>gb|BC087747.1| Xenopus tropicalis cDNA clone IMAGE:6997995
          Length = 1919

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 30   ctaaatttttaattgaggttcc 51
            ||||||||||||||||||||||
Sbjct: 1708 ctaaatttttaattgaggttcc 1729



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>gb|AC129146.3| Rattus norvegicus 2 BAC CH230-266D19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 180291

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   aagaataaaagagaaaagccc 185
             |||||||||||||||||||||
Sbjct: 98364 aagaataaaagagaaaagccc 98344



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>gb|AC164163.2| Mus musculus BAC clone RP23-243L21 from chromosome 16, complete
             sequence
          Length = 178656

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   cacacccagcagtcacacaca 306
             |||||||||||||||||||||
Sbjct: 54406 cacacccagcagtcacacaca 54386



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>emb|BX936412.46| Zebrafish DNA sequence from clone DKEY-235H13, complete sequence
          Length = 178114

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 1   atatttaatattggtatcttg 21
           |||||||||||||||||||||
Sbjct: 244 atatttaatattggtatcttg 224



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>emb|CT030235.12| Mouse DNA sequence from clone RP23-240F19 on chromosome 16, complete
              sequence
          Length = 236028

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 286    cacacccagcagtcacacaca 306
              |||||||||||||||||||||
Sbjct: 232149 cacacccagcagtcacacaca 232169



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>gb|AC151369.4| Aotus nancymaae clone CH258-279B4, complete sequence
          Length = 196485

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   taaacatgaagatctcaaaa 155
             ||||||||||||||||||||
Sbjct: 30783 taaacatgaagatctcaaaa 30764



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>gb|AC109460.3| Homo sapiens chromosome 16 clone RP11-264B17, complete sequence
          Length = 163424

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    gaagaataaaagagaaaagc 183
              ||||||||||||||||||||
Sbjct: 163054 gaagaataaaagagaaaagc 163073



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>gb|AC125278.1| Mus musculus BAC clone RP24-481N2 from 12, complete sequence
          Length = 132398

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 283   atgcacacccagcagtcacacaca 306
             ||||||||||||||| ||||||||
Sbjct: 18530 atgcacacccagcagacacacaca 18553



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>emb|AL591604.6| Human DNA sequence from clone RP11-356F4 on chromosome 1 Contains the
             5' end of the SLICK gene for a sodium- and
             chloride-activated ATP-sensitive potassium channel,
             complete sequence
          Length = 185560

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   caactagctataaacatgaa 145
             ||||||||||||||||||||
Sbjct: 36677 caactagctataaacatgaa 36696



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>emb|CR759959.15| Zebrafish DNA sequence from clone DKEY-253H15 in linkage group 5,
            complete sequence
          Length = 170133

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 168  aataaaagagaaaagcccct 187
            ||||||||||||||||||||
Sbjct: 8456 aataaaagagaaaagcccct 8437



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>gb|AC112166.3| Homo sapiens chromosome 16 clone CTB-134H23, complete sequence
          Length = 131839

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   gaagaataaaagagaaaagc 183
             ||||||||||||||||||||
Sbjct: 70182 gaagaataaaagagaaaagc 70163



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>gb|AC107877.4| Homo sapiens chromosome 8, clone RP11-74P9, complete sequence
          Length = 181925

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 25    aggaactaaatttttaattg 44
             ||||||||||||||||||||
Sbjct: 80041 aggaactaaatttttaattg 80022



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>gb|AC026956.20| Homo sapiens chromosome 15, clone RP11-597K23, complete sequence
          Length = 215520

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     aggaactaaatttttaattg 44
              ||||||||||||||||||||
Sbjct: 210473 aggaactaaatttttaattg 210492



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>gb|AC026624.8| Homo sapiens chromosome 15, clone RP11-652P10, complete sequence
          Length = 143709

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     aggaactaaatttttaattg 44
              ||||||||||||||||||||
Sbjct: 134525 aggaactaaatttttaattg 134506



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>gb|AF002525.1|AF002525 Pterolebias xiphophorus 16S ribosomal RNA gene, mitochondrial gene
           for mitochondrial RNA, partial sequence
          Length = 457

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 159 caaccgaagaataaaagaga 178
           ||||||||||||||||||||
Sbjct: 242 caaccgaagaataaaagaga 223



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>dbj|AP005364.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1970D8, complete
              sequence
          Length = 168850

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     aggaactaaatttttaattg 44
              ||||||||||||||||||||
Sbjct: 101638 aggaactaaatttttaattg 101619



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>dbj|AP003789.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1433G4, complete
             sequence
          Length = 175784

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ctcaggaactaaatttttaa 41
             ||||||||||||||||||||
Sbjct: 35436 ctcaggaactaaatttttaa 35455


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,546,281
Number of Sequences: 3902068
Number of extensions: 3546281
Number of successful extensions: 68607
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68569
Number of HSP's gapped (non-prelim): 38
length of query: 331
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 309
effective length of database: 17,147,199,772
effective search space: 5298484729548
effective search space used: 5298484729548
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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