ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineraliz... 30 2.2
2SPB8_BOVIN (Q5BIR5) Serpin B8 29 3.7

>PDLI7_CHICK (Q679P3) PDZ and LIM domain protein 7 (LIM mineralization protein)|
          Length = 416

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +1

Query: 43  QNWVHACGDRLCTTLQTMQ 99
           QN + ACGDRLC TL   Q
Sbjct: 67  QNRIRACGDRLCLTLSRAQ 85



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>SPB8_BOVIN (Q5BIR5) Serpin B8|
          Length = 374

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 139 ASGAEAVIA*SRICR*SGKFWAGHP 213
           A+GA AV+  SR CR   KF A HP
Sbjct: 328 AAGATAVVRNSRCCRMEPKFCADHP 352


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,790,577
Number of Sequences: 219361
Number of extensions: 714563
Number of successful extensions: 1484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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