ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl24b09 |
|---|---|
| Clone Library Name | barley_pub |
>ETR2_PELHO (Q9XH57) Ethylene receptor 2 (EC 2.7.13.3) (PhETR2)| Length = 741 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = -2 Query: 386 DDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQH 279 D +D C R G+ G++ KPV++ + + + +L+H Sbjct: 699 DQVTKDNCTRVGMEGVVLKPVSIDKMRNVLSNLLEH 734
>CDX2_MESAU (Q04649) Homeobox protein CDX-2 (Caudal-type homeobox protein 2)| Length = 313 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/43 (37%), Positives = 18/43 (41%) Frame = +2 Query: 254 HRDTTTISCAEGLYTLHLPGPPM*RASGAARLFPTAGTGPGHC 382 H SCA GL PGPP A+GAA +G C Sbjct: 123 HHPAAAPSCASGLLQTLNPGPPGPAATGAAEQLSPSGQRRNLC 165
>NUAM_NEUCR (P24918) NADH-ubiquinone oxidoreductase 78 kDa subunit,| mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (Complex I-78KD) (CI-78KD) Length = 744 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -3 Query: 316 RPWEMKCIESFSTTDGCGVSVDLD 245 RPWE+K ES DG G ++ +D Sbjct: 247 RPWELKKTESIDVLDGLGSNIRVD 270
>ETR1_MALDO (O81122) Ethylene receptor (EC 2.7.13.3)| Length = 741 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = -2 Query: 386 DDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQH 279 D ++ C R G++G++ KPV++ + + +L+H Sbjct: 699 DKITKENCMRVGVDGVILKPVSVDKMRSVLSELLEH 734
>ETR1_PRUPE (Q9M7M1) Ethylene receptor (EC 2.7.13.3)| Length = 738 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = -2 Query: 386 DDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQH 279 D ++ C R G++G++ KPV++ + + +L+H Sbjct: 696 DKMTKENCMRVGMDGVILKPVSVDKMRSVLSELLEH 731
>ETR1_ARATH (P49333) Ethylene receptor (EC 2.7.13.3)| Length = 738 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/35 (31%), Positives = 23/35 (65%) Frame = -2 Query: 386 DDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQ 282 D + +++C G++G+L KPV+L + D + +L+ Sbjct: 696 DKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 730
>RCSC_SALTI (Q56128) Sensor protein rcsC (EC 2.7.13.3) (Capsular synthesis| regulator component C) Length = 948 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -2 Query: 374 RDRCQRSGINGLLQKPVTLAAL 309 + RC SG++ L KPVTL AL Sbjct: 911 KQRCLESGMDSCLSKPVTLDAL 932
>KAT1_RAT (Q08415) Kynurenine--oxoglutarate transaminase 1, mitochondrial| precursor (EC 2.6.1.7) (Kynurenine--oxoglutarate transaminase I) (Kynurenine aminotransferase I) (KATI) (Glutamine--phenylpyruvate transaminase) (EC 2.6.1.64) (Glutamine transaminas Length = 457 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/18 (61%), Positives = 11/18 (61%) Frame = -2 Query: 134 VHFAWFLWGRKGGEFWTR 81 VH W LWGRK G TR Sbjct: 10 VHLMWPLWGRKAGASLTR 27
>ETR1_PELHO (Q9XH58) Ethylene receptor 1 (EC 2.7.13.3) (PhETR1)| Length = 740 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/36 (27%), Positives = 23/36 (63%) Frame = -2 Query: 386 DDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQH 279 D ++ C R G+ G++ KPV++ + + + ++L+H Sbjct: 699 DKVTKENCLRVGMEGVILKPVSVDKMRNVLSKLLEH 734
>ETR1_BRAOL (O49230) Ethylene receptor (EC 2.7.13.3)| Length = 735 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/36 (30%), Positives = 23/36 (63%) Frame = -2 Query: 386 DDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQH 279 D + +++C G++G+L KPV+L + + + L+H Sbjct: 693 DKSTKEKCMSFGLDGVLLKPVSLDNMRNVLSDRLEH 728
>URE1_NOCFA (Q5YWR8) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 573 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 276 VVLKDSIHFISQGRQCDGLLEQPVYSRPLAPVPDI 380 V S+HF+S+ DGL E+ R L V D+ Sbjct: 489 VAAATSLHFVSEHALADGLAERLAVRRKLVAVKDV 523
>DPOLQ_HUMAN (O75417) DNA polymerase theta (EC 2.7.7.7) (DNA polymerase eta)| Length = 1762 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -2 Query: 386 DDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVL 285 D NV C+R +N KP ALGD++ R + Sbjct: 402 DSNVTINCERIKLNTEENKPSHFQALGDDISRTV 435
>ETR1_TOBAC (O48929) Ethylene receptor (EC 2.7.13.3) (NT-ETR1)| Length = 738 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = -2 Query: 386 DDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQH 279 D ++ C R G++G++ KPV++ + + +L+H Sbjct: 697 DRVTKENCMRVGMDGVILKPVSVDKMRSVLSELLEH 732
>ETR1_LYCES (Q41342) Ethylene receptor 1 (EC 2.7.13.3) (LeETR1)| Length = 754 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/36 (27%), Positives = 22/36 (61%) Frame = -2 Query: 386 DDNVRDRCQRSGINGLLQKPVTLAALGDEVYRVLQH 279 D ++ C R G++G++ KPV++ + + +L+H Sbjct: 713 DRVTKENCMRVGMDGVILKPVSVYKMRSVLSELLEH 748
>MTGA_HAEIN (P44890) Monofunctional biosynthetic peptidoglycan transglycosylase| (EC 2.4.2.-) (Monofunctional TGase) Length = 246 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +2 Query: 62 MIKPKKT*SKIPHLFFPKGTKRNVQFLPFC 151 M K K+ + + HLF PK K+N Q + FC Sbjct: 1 MKKTKRIFTALSHLFSPKWWKKNWQRVVFC 30
>GLGL3_WHEAT (P12300) Glucose-1-phosphate adenylyltransferase large subunit,| chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) (Fragment) Length = 500 Score = 27.3 bits (59), Expect = 9.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = +1 Query: 94 SPPFLPQRNQAKCTIPSFLFVHKCFM 171 SP +LP KC I + +H CF+ Sbjct: 366 SPRYLPPTKSDKCRIKEAIILHGCFL 391 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,125,376 Number of Sequences: 219361 Number of extensions: 977286 Number of successful extensions: 2249 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2221 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2249 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 1386249648 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
