ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24b08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIWL4_HUMAN (Q7Z3Z4) Piwi-like protein 4 29 2.9
2YQZ2_CAEEL (Q09320) Hypothetical protein F40B5.2 29 3.8
3RAIA_SHIFL (P0AD52) Ribosome-associated inhibitor A 28 8.4
4RAIA_ECOLI (P0AD49) Ribosome-associated inhibitor A (Protein Y) ... 28 8.4
5RAIA_ECOL6 (P0AD50) Ribosome-associated inhibitor A 28 8.4
6RAIA_ECO57 (P0AD51) Ribosome-associated inhibitor A 28 8.4

>PIWL4_HUMAN (Q7Z3Z4) Piwi-like protein 4|
          Length = 852

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 110 NTSSFFSVKTWALHITYRVVRHGSIHPSTNI*LPNYI 220
           NT++ F ++TW LH   ++   G I PS  I + ++I
Sbjct: 424 NTNARFELETWGLHFGSQISLTGRIVPSEKILMQDHI 460



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>YQZ2_CAEEL (Q09320) Hypothetical protein F40B5.2|
          Length = 482

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +3

Query: 27  LSHSHQIR*SIHPLVHSFNCFHLLYDLTIPHLFSLSKHGLYI*HTESSGTDPSIHPPTSS 206
           L HS     S+H  +    C+H+L  L +  +F  +  GLY  HT+      SI  P   
Sbjct: 186 LIHSKVAPNSVHTYLKENRCYHILLALILGFIFMFA--GLYTTHTDPIVRSASI--PMKR 241

Query: 207 YQTIS 221
           +Q+ S
Sbjct: 242 FQSNS 246



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>RAIA_SHIFL (P0AD52) Ribosome-associated inhibitor A|
          Length = 112

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 148 TYNIQSRQARIHPSIHQHLATKL 216
           T NI S+Q  I P+I QH+A +L
Sbjct: 1   TMNITSKQMEITPAIRQHVADRL 23



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>RAIA_ECOLI (P0AD49) Ribosome-associated inhibitor A (Protein Y) (SpotY) (pY)|
          Length = 112

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 148 TYNIQSRQARIHPSIHQHLATKL 216
           T NI S+Q  I P+I QH+A +L
Sbjct: 1   TMNITSKQMEITPAIRQHVADRL 23



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>RAIA_ECOL6 (P0AD50) Ribosome-associated inhibitor A|
          Length = 112

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 148 TYNIQSRQARIHPSIHQHLATKL 216
           T NI S+Q  I P+I QH+A +L
Sbjct: 1   TMNITSKQMEITPAIRQHVADRL 23



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>RAIA_ECO57 (P0AD51) Ribosome-associated inhibitor A|
          Length = 112

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 148 TYNIQSRQARIHPSIHQHLATKL 216
           T NI S+Q  I P+I QH+A +L
Sbjct: 1   TMNITSKQMEITPAIRQHVADRL 23


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,223,309
Number of Sequences: 219361
Number of extensions: 555212
Number of successful extensions: 1229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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