ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PRT1_ARATH (Q8LBL5) Ubiquitin protein ligase PRT1 (EC 6.3.2.-) (... 32 0.53
2MRP8_ARATH (Q8VZZ4) Multidrug resistance-associated protein 8 (E... 31 0.69

>PRT1_ARATH (Q8LBL5) Ubiquitin protein ligase PRT1 (EC 6.3.2.-) (Proteolysis 1|
           protein)
          Length = 410

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 156 IIILPSHLSIFFCIHSSIFNFNFEDLVFCSSVLVHF 49
           I++   HLS F+C+H S+  F       C    VHF
Sbjct: 37  IVLSCGHLSCFWCVHKSMNGFRESHCPICRDPYVHF 72



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>MRP8_ARATH (Q8VZZ4) Multidrug resistance-associated protein 8 (EC 3.6.3.44)|
           (Glutathione S-conjugate transporting ATPase 8)
           (ATP-energized glutathione S-conjugate pump 8)
          Length = 1466

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -3

Query: 258 AIMNHENGVLLRQQFSYNR-VLFCDVL*HS*IVVNIIILPSHLSIFFCIHSSIFNFNFED 82
           AIMN E        FSYN+ VL C         V++ +  S LS+  C+H     + F D
Sbjct: 47  AIMNEE---FKHISFSYNKLVLIC--------CVSLSVFYSVLSLLSCLHWHTNGWPFLD 95

Query: 81  LVFCSSVLVHFSVYYSG*FTS 19
           L+  +      SVY  G +T+
Sbjct: 96  LLLAALTWGSISVYLFGRYTN 116


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,257,616
Number of Sequences: 219361
Number of extensions: 486656
Number of successful extensions: 827
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 80,573,946
effective HSP length: 78
effective length of database: 63,463,788
effective search space used: 1523130912
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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