ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl24b05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL935122.10| Zebrafish DNA sequence from clone CH211-197C14 in linkage group 6, complete sequence Length = 198363 Score = 48.1 bits (24), Expect = 0.017 Identities = 24/24 (100%) Strand = Plus / Plus Query: 126 agatactcaaatgacttggcaaaa 149 |||||||||||||||||||||||| Sbjct: 47931 agatactcaaatgacttggcaaaa 47954
>gb|AC147021.3| Pan troglodytes BAC clone RP43-85B14 from 7, complete sequence Length = 159960 Score = 46.1 bits (23), Expect = 0.066 Identities = 23/23 (100%) Strand = Plus / Minus Query: 118 acaaaagaagatactcaaatgac 140 ||||||||||||||||||||||| Sbjct: 4991 acaaaagaagatactcaaatgac 4969
>gb|AC006319.3| Homo sapiens PAC clone RP5-837C9 from 7, complete sequence Length = 85821 Score = 46.1 bits (23), Expect = 0.066 Identities = 23/23 (100%) Strand = Plus / Plus Query: 118 acaaaagaagatactcaaatgac 140 ||||||||||||||||||||||| Sbjct: 29899 acaaaagaagatactcaaatgac 29921
>gb|AC164650.3| Mus musculus BAC clone RP23-47A4 from chromosome 1, complete sequence Length = 200598 Score = 46.1 bits (23), Expect = 0.066 Identities = 23/23 (100%) Strand = Plus / Plus Query: 80 aaatcctcaaaattgaaattgaa 102 ||||||||||||||||||||||| Sbjct: 129995 aaatcctcaaaattgaaattgaa 130017
>gb|AC124759.4| Mus musculus BAC clone RP23-132N7 from 1, complete sequence Length = 200104 Score = 46.1 bits (23), Expect = 0.066 Identities = 23/23 (100%) Strand = Plus / Plus Query: 80 aaatcctcaaaattgaaattgaa 102 ||||||||||||||||||||||| Sbjct: 85000 aaatcctcaaaattgaaattgaa 85022
>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence Length = 2205233 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 25 aaactatccagaataatacactgaaa 50 ||||||||||||||||| |||||||| Sbjct: 395650 aaactatccagaataattcactgaaa 395625
>gb|AC159426.1| Trypanosoma brucei chromosome 7 clone RPCI93-27M11, complete sequence Length = 156973 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 25 aaactatccagaataatacactgaaa 50 ||||||||||||||||| |||||||| Sbjct: 143802 aaactatccagaataattcactgaaa 143777
>gb|AC098931.3| Homo sapiens chromosome 3 clone RP11-353I6, complete sequence Length = 179082 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 119 caaaagaagatactcaaatgac 140 |||||||||||||||||||||| Sbjct: 169956 caaaagaagatactcaaatgac 169977
>emb|BX901973.12| Zebrafish DNA sequence from clone DKEY-26L17 in linkage group 3, complete sequence Length = 226081 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 tgaatacaaaagaagatactc 133 ||||||||||||||||||||| Sbjct: 16052 tgaatacaaaagaagatactc 16072
>emb|AL358875.13| Human DNA sequence from clone RP11-312H18 on chromosome 1, complete sequence Length = 171635 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 gaataatacactgaaaagtgc 55 ||||||||||||||||||||| Sbjct: 158476 gaataatacactgaaaagtgc 158496
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 80 aaatcctcaaaattgaaattg 100 ||||||||||||||||||||| Sbjct: 4547111 aaatcctcaaaattgaaattg 4547131
>gb|AC068051.7| Homo sapiens BAC clone RP11-172J1 from 2, complete sequence Length = 122076 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 cacaaggactgaagaacaaaa 75 ||||||||||||||||||||| Sbjct: 91551 cacaaggactgaagaacaaaa 91571
>emb|BX649514.8| Zebrafish DNA sequence from clone CH211-232P6 in linkage group 4, complete sequence Length = 152488 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 atgaatacaaaagaagatact 132 ||||||||||||||||||||| Sbjct: 102703 atgaatacaaaagaagatact 102723
>gb|AC010072.5|AC010072 Homo sapiens chromosome 14q31 clone CTD-2173I4 containing TSHR gene, partial cds; and unknown gene, complete sequence Length = 124347 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 58 aaggactgaagaacaaaagac 78 ||||||||||||||||||||| Sbjct: 23833 aaggactgaagaacaaaagac 23853
>emb|BX649444.12| Zebrafish DNA sequence from clone DKEYP-27E10 in linkage group 4, complete sequence Length = 85097 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 atgaatacaaaagaagatact 132 ||||||||||||||||||||| Sbjct: 15632 atgaatacaaaagaagatact 15652
>emb|CR848815.7| Zebrafish DNA sequence from clone CH211-197C11 in linkage group 15, complete sequence Length = 161902 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 atccagaataatacactgaaa 50 ||||||||||||||||||||| Sbjct: 72479 atccagaataatacactgaaa 72459
>emb|AL732625.8| Mouse DNA sequence from clone RP23-169H17 on chromosome 2, complete sequence Length = 224038 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 237 cattttcatgattcatgattg 257 ||||||||||||||||||||| Sbjct: 206210 cattttcatgattcatgattg 206190
>emb|AL732460.7| Mouse DNA sequence from clone RP23-113I19 on chromosome X, complete sequence Length = 198572 Score = 42.1 bits (21), Expect = 1.0 Identities = 33/37 (89%) Strand = Plus / Plus Query: 144 gcaaaatgataatattcacgacaatttaactatgtca 180 |||||||||| |||| ||| | ||||||||||||||| Sbjct: 20012 gcaaaatgattatatgcactagaatttaactatgtca 20048
>ref|XM_519508.1| PREDICTED: Pan troglodytes similar to myeloid/lymphoid or mixed-lineage leukemia 3; myeloid/lymphoid or mixed-lineage leukemia3; ALR-like protein (LOC463875), mRNA Length = 11622 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 caaaattgaaattgaagatt 106 |||||||||||||||||||| Sbjct: 1997 caaaattgaaattgaagatt 2016
>gb|AC119878.7| Mus musculus chromosome 3, clone RP24-329A3, complete sequence Length = 132644 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 77 actaaatcctcaaaattgaaattg 100 |||||||||| ||||||||||||| Sbjct: 54742 actaaatccttaaaattgaaattg 54719
>ref|NM_021230.2| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia 3 (MLL3), transcript variant 1, mRNA Length = 14358 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 caaaattgaaattgaagatt 106 |||||||||||||||||||| Sbjct: 1151 caaaattgaaattgaagatt 1170
>ref|NM_170606.2| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia 3 (MLL3), transcript variant 2, mRNA Length = 16872 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 caaaattgaaattgaagatt 106 |||||||||||||||||||| Sbjct: 3824 caaaattgaaattgaagatt 3843
>gb|AC006474.3| Homo sapiens PAC clone RP4-669I17 from 7, complete sequence Length = 69718 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 caaaattgaaattgaagatt 106 |||||||||||||||||||| Sbjct: 48917 caaaattgaaattgaagatt 48898
>gb|AC140370.3| Mus musculus BAC clone RP24-75N6 from chromosome 7, complete sequence Length = 189786 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 aatacaaaagaagatactca 134 |||||||||||||||||||| Sbjct: 42564 aatacaaaagaagatactca 42583
>emb|BX664703.21| Zebrafish DNA sequence from clone DKEYP-74A8 in linkage group 6, complete sequence Length = 193958 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tgaatacaaaagaagatact 132 |||||||||||||||||||| Sbjct: 163379 tgaatacaaaagaagatact 163398
>emb|CR788261.6| Human DNA sequence from clone RP11-93P10 on chromosome 9 Contains an ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit, isoform 2, non-cardiac muscle (ATP5A2) pseudogene, a novel pseudogene, a FK506 binding protein 4, 59kDa (FKBP4) pseudogene and a CpG island, complete sequence Length = 169752 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gaaattgaagattgaggaat 113 |||||||||||||||||||| Sbjct: 164086 gaaattgaagattgaggaat 164067
>emb|BX664608.6| Human DNA sequence from clone RP11-1082I11 on chromosome 9 Contains an S-phase kinase-associated protein 1A (p19A) (SKP1A) pseudogene, a novel protein and two CpG islands, complete sequence Length = 168113 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gaaattgaagattgaggaat 113 |||||||||||||||||||| Sbjct: 96646 gaaattgaagattgaggaat 96627
>emb|BX248098.7| Human DNA sequence from clone CTD-2173L22 on chromosome 9 Contains a novel gene, a zinc finger protein pseudogene, a S-phase kinase-associated protein 1A (p19A) (SKP1A) pseudogene and two CpG islands, complete sequence Length = 119184 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gaaattgaagattgaggaat 113 |||||||||||||||||||| Sbjct: 32115 gaaattgaagattgaggaat 32096
>emb|BX005209.7| Human DNA sequence from clone RP11-448C16 on chromosome 9 Contains a CpG island, complete sequence Length = 65900 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gaaattgaagattgaggaat 113 |||||||||||||||||||| Sbjct: 4346 gaaattgaagattgaggaat 4365
>emb|AL596385.12| Human DNA sequence from clone RP11-95K23 on chromosome 9 Contains the gene for a novel protein similar to FLJ45202, the gene for a novel protein similar to chromosome 9 open reading frame 36 (C9orf36), a pseudogene similar to part of contactin associated protein-like 4 (CNTNAP4), a novel pseudogene, three novel genes and a CpG island, complete sequence Length = 172579 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gaaattgaagattgaggaat 113 |||||||||||||||||||| Sbjct: 46362 gaaattgaagattgaggaat 46343
>emb|AL445584.16| Human DNA sequence from clone RP11-366N18 on chromosome 9 Contains the gene for a novel protein similar to chromosome 9 open reading frame 36 (C9orf36), a 6-pyruvoyltetrahydropterin synthase (PTS) pseudogene and a CpG island, complete sequence Length = 184313 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gaaattgaagattgaggaat 113 |||||||||||||||||||| Sbjct: 115800 gaaattgaagattgaggaat 115819
>emb|AL391318.21| Human DNA sequence from clone RP11-496H23 on chromosome 10, complete sequence Length = 45312 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 tacaaaagaagatactcaaatgac 140 |||||||||||||| ||||||||| Sbjct: 30051 tacaaaagaagatattcaaatgac 30074
>gb|AC090698.14| Homo sapiens chromosome 17, clone RP11-296K13, complete sequence Length = 87790 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gcaaaatgataatattcacg 163 |||||||||||||||||||| Sbjct: 50672 gcaaaatgataatattcacg 50691
>emb|AL080239.12|HSG256O22 Human DNA sequence from clone GS1-256O22 on chromosome Xq26.3-28 Contains a novel pseudogene, the DKFZp547M2010 gene, a heterogeneous nuclear ribonucleoprotein H pseudogene, a novel gene and a CpG island, complete sequence Length = 216215 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 85 ctcaaaattgaaattgaagattga 108 ||||||||||||||||| |||||| Sbjct: 109326 ctcaaaattgaaattgaggattga 109349
>emb|BX321904.19| Zebrafish DNA sequence from clone DKEY-279K15 in linkage group 1, complete sequence Length = 153891 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tgaatacaaaagaagatact 132 |||||||||||||||||||| Sbjct: 138534 tgaatacaaaagaagatact 138553
>emb|CR394534.6| Zebrafish DNA sequence from clone CH211-276A17 in linkage group 6, complete sequence Length = 153370 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tgaatacaaaagaagatact 132 |||||||||||||||||||| Sbjct: 9489 tgaatacaaaagaagatact 9508
>emb|AL445565.1|MPULM03 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3 Length = 315079 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 aattgaaattgaagattgag 109 |||||||||||||||||||| Sbjct: 27084 aattgaaattgaagattgag 27103
>emb|CR392348.10| Zebrafish DNA sequence from clone DKEYP-51A12 in linkage group 13, complete sequence Length = 89943 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tgaatacaaaagaagatact 132 |||||||||||||||||||| Sbjct: 78710 tgaatacaaaagaagatact 78691
>emb|BX664609.6| Human DNA sequence from clone RP11-111O3 on chromosome 9 Contains a S-phase kinase-associated protein 1A (p19A) (SKP1A) pseudogene and a pseduogene similar to part of a novel protein, complete sequence Length = 157893 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 gaaattgaagattgaggaat 113 |||||||||||||||||||| Sbjct: 89837 gaaattgaagattgaggaat 89818
>gb|AY024361.1| Homo sapiens MLL3 mRNA, complete cds Length = 14977 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 caaaattgaaattgaagatt 106 |||||||||||||||||||| Sbjct: 3785 caaaattgaaattgaagatt 3804
>dbj|AK095628.1| Homo sapiens cDNA FLJ38309 fis, clone FCBBF3019564, highly similar to Homo sapiens ALR-like protein mRNA Length = 2751 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 caaaattgaaattgaagatt 106 |||||||||||||||||||| Sbjct: 2546 caaaattgaaattgaagatt 2565
>gb|AF264750.2| Homo sapiens ALR-like protein mRNA, complete cds Length = 12689 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 caaaattgaaattgaagatt 106 |||||||||||||||||||| Sbjct: 1151 caaaattgaaattgaagatt 1170
>gb|AC012310.5| Homo sapiens chromosome 19 clone CTC-518O7, complete sequence Length = 115767 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cctcaacagtactccattttcatg 246 |||||||||| ||||||||||||| Sbjct: 81440 cctcaacagttctccattttcatg 81417
>gb|AC026337.29| Homo sapiens 2 BAC RP11-105E24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171004 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 acaaaagaagatactcaaat 137 |||||||||||||||||||| Sbjct: 30996 acaaaagaagatactcaaat 30977
>emb|BX569785.12| Zebrafish DNA sequence from clone DKEY-159F4 in linkage group 10, complete sequence Length = 140734 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tgaatacaaaagaagatact 132 |||||||||||||||||||| Sbjct: 43795 tgaatacaaaagaagatact 43776
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 aatcagcaattcaagcgttt 278 |||||||||||||||||||| Sbjct: 871749 aatcagcaattcaagcgttt 871768
>gb|AC026445.5| Homo sapiens chromosome 5 clone CTD-2306M10, complete sequence Length = 113087 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 attttcatgattcatgattg 257 |||||||||||||||||||| Sbjct: 23376 attttcatgattcatgattg 23357
>gb|AC010420.11| Homo sapiens chromosome 5 clone CTD-2187J20, complete sequence Length = 88736 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 attttcatgattcatgattg 257 |||||||||||||||||||| Sbjct: 2466 attttcatgattcatgattg 2485
>gb|AC018678.9| Homo sapiens BAC clone RP11-279E17 from 2, complete sequence Length = 169991 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 acaaaagaagatactcaaat 137 |||||||||||||||||||| Sbjct: 71249 acaaaagaagatactcaaat 71230
>emb|BX470223.14| Zebrafish DNA sequence from clone DKEY-45P9 in linkage group 10, complete sequence Length = 247644 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 tgaatacaaaagaagatact 132 |||||||||||||||||||| Sbjct: 50876 tgaatacaaaagaagatact 50895
>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete sequence Length = 213581 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 aatacaaaagaagatactca 134 |||||||||||||||||||| Sbjct: 93764 aatacaaaagaagatactca 93783
>dbj|AK025911.1| Homo sapiens cDNA: FLJ22258 fis, clone HRC02910, highly similar to AF264750 Homo sapiens ALR-like protein mRNA Length = 2269 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 caaaattgaaattgaagatt 106 |||||||||||||||||||| Sbjct: 2050 caaaattgaaattgaagatt 2069
>emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 in linkage group 19, complete sequence Length = 182182 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tgaatacaaaagaagatact 132 |||||||||||||||||||| Sbjct: 145066 tgaatacaaaagaagatact 145047
>emb|BX465184.7| Zebrafish DNA sequence from clone DKEY-20N10 in linkage group 20, complete sequence Length = 139351 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tgaatacaaaagaagatact 132 |||||||||||||||||||| Sbjct: 25758 tgaatacaaaagaagatact 25739
>emb|BX005050.6| Zebrafish DNA sequence from clone CH211-11A11, complete sequence Length = 166695 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tgaatacaaaagaagatact 132 |||||||||||||||||||| Sbjct: 88841 tgaatacaaaagaagatact 88822
>emb|BX005067.6| Zebrafish DNA sequence from clone CH211-182K2 in linkage group 24, complete sequence Length = 162692 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tgaatacaaaagaagatact 132 |||||||||||||||||||| Sbjct: 118093 tgaatacaaaagaagatact 118074
>emb|AL772339.5| Zebrafish DNA sequence from clone CH211-139K23, complete sequence Length = 166809 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tgaatacaaaagaagatact 132 |||||||||||||||||||| Sbjct: 115254 tgaatacaaaagaagatact 115235
>dbj|AB026531.1| Lordiphosa pseudotenuicauda gene for alcohol dehydrogenase, partial cds Length = 820 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 agcaattcaagcgtttagtt 282 |||||||||||||||||||| Sbjct: 570 agcaattcaagcgtttagtt 551
>dbj|AB040939.2| Homo sapiens mRNA for KIAA1506 protein, partial cds Length = 9929 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 caaaattgaaattgaagatt 106 |||||||||||||||||||| Sbjct: 1940 caaaattgaaattgaagatt 1959 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,593,620 Number of Sequences: 3902068 Number of extensions: 3593620 Number of successful extensions: 77285 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77114 Number of HSP's gapped (non-prelim): 171 length of query: 308 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 286 effective length of database: 17,147,199,772 effective search space: 4904099134792 effective search space used: 4904099134792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
