ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl24a11 |
|---|---|
| Clone Library Name | barley_pub |
>PWP1_YEAST (P21304) Periodic tryptophan protein 1| Length = 576 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/47 (29%), Positives = 24/47 (51%) Frame = -3 Query: 327 TSIVKSHHPMVYTQVRHEEYTRPFIYSCSVIHVGRLLNVSAHNPARS 187 T + +HH + H +Y R + S S H +L ++++ N ARS Sbjct: 278 TGHITTHHTDAVLSMAHNKYFRSVLASTSADHTVKLWDLNSGNAARS 324
>M4K3_MOUSE (Q99JP0) Mitogen-activated protein kinase kinase kinase kinase 3| (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 3) (MEK kinase kinase 3) (MEKKK 3) (Germinal center kinase-related protein kinase) (GLK) (Fragments) Length = 681 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = -2 Query: 409 GAA*SY*YLGCEPRSLCHIAYHRPFINDKHRQVASSDGLYSSSARRVHQTLYLLLFCYSC 230 GA S + GC + C ++ P D++ + +G+Y+ + +H+T LF C Sbjct: 332 GACFSKVFNGCPLKIHCATSWINPDTRDQYLIFGAEEGIYTLNLNELHETSMEQLFPRRC 391
>M4K3_RAT (Q924I2) Mitogen-activated protein kinase kinase kinase kinase 3| (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 3) (MEK kinase kinase 3) (MEKKK 3) (Germinal center kinase-related protein kinase) (GLK) (Fragment) Length = 862 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = -2 Query: 409 GAA*SY*YLGCEPRSLCHIAYHRPFINDKHRQVASSDGLYSSSARRVHQTLYLLLFCYSC 230 GA S + GC + C ++ P D++ + +G+Y+ + +H+T LF C Sbjct: 513 GACFSKVFNGCPLKIHCATSWINPDTRDQYLIFGAEEGIYTLNLNELHETSMEQLFPRRC 572
>NAS31_CAEEL (Q7JLI1) Zinc metalloproteinase nas-31 precursor (EC 3.4.24.21)| (Nematode astacin 31) Length = 611 Score = 28.5 bits (62), Expect = 4.0 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 14/75 (18%) Frame = +1 Query: 85 STTTLSFKQRQ*YK--YFPKCSLGLHMINLINRVLT----------ATSW--IVC*NIQQ 222 + +T S +RQ Y+ Y+P + G + +R T W + C NI Q Sbjct: 149 TVSTASRARRQAYRDRYYPSTTWGSSVYYYYDRTATPKIVKAFEQAVAFWQNVTCINIMQ 208 Query: 223 TTNMNNRTRVNKGSG 267 ++ NR RV KG G Sbjct: 209 SSTAINRIRVFKGQG 223
>M4K5_HUMAN (Q9Y4K4) Mitogen-activated protein kinase kinase kinase kinase 5| (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 5) (MEK kinase kinase 5) (MEKKK 5) (Kinase homologous to SPS1/STE20) (KHS) Length = 846 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/60 (25%), Positives = 27/60 (45%) Frame = -2 Query: 409 GAA*SY*YLGCEPRSLCHIAYHRPFINDKHRQVASSDGLYSSSARRVHQTLYLLLFCYSC 230 GA S + GC + C ++ P D++ + DG+Y+ + +H+ LF C Sbjct: 495 GACFSKVFDGCPLKINCATSWIHPDTKDQYIIFGTEDGIYTLNLNELHEATMEQLFPRKC 554
>SPB42_CANAL (Q59NP8) ATP-dependent rRNA helicase SPB42 (EC 3.6.1.-)| Length = 631 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Frame = +1 Query: 58 YMLVYSFIESTTTLSFKQRQ*YK----YFPKCSLGLHMINLINRV 180 YM++ ++ TT L+ + YK YFP C+ H + N+V Sbjct: 257 YMMINPELKITTLLTILSKYQYKKAIVYFPTCTSVKHFYQIFNKV 301
>SPB41_CANAL (Q59N29) ATP-dependent rRNA helicase SPB41 (EC 3.6.1.-)| Length = 631 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Frame = +1 Query: 58 YMLVYSFIESTTTLSFKQRQ*YK----YFPKCSLGLHMINLINRV 180 YM++ ++ TT L+ + YK YFP C+ H + N+V Sbjct: 257 YMMINPELKITTLLTILSKYQYKKAIVYFPTCTSVKHFYQIFNKV 301
>M4K5_MOUSE (Q8BPM2) Mitogen-activated protein kinase kinase kinase kinase 5| (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 5) (MEK kinase kinase 5) (MEKKK 5) Length = 847 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/60 (25%), Positives = 27/60 (45%) Frame = -2 Query: 409 GAA*SY*YLGCEPRSLCHIAYHRPFINDKHRQVASSDGLYSSSARRVHQTLYLLLFCYSC 230 GA S + GC + C ++ P D++ + DG+Y+ + +H+ LF C Sbjct: 496 GACFSKVFDGCPLKINCATSWIHPDTKDQYIIFGTEDGIYTLNLNELHEATMEQLFPRKC 555
>CCG1_MOUSE (O70578) Voltage-dependent calcium channel gamma-1 subunit| (Dihydropyridine-sensitive L-type, skeletal muscle calcium channel gamma subunit) Length = 223 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Frame = -3 Query: 354 LLITDPL*MTSIVKSHHPMVYTQVRHEEYTRPFIYSCSVIHVGR----LLNVSAHNPARS 187 +L+ L M ++V H ++ + H T C H G V+ HN +S Sbjct: 16 ILVGGVLAMVAVVTDHWAVLSPHLEHHNET------CEAAHFGLWRICTARVAVHNKDKS 69 Query: 186 CEH 178 CEH Sbjct: 70 CEH 72
>M4K3_HUMAN (Q8IVH8) Mitogen-activated protein kinase kinase kinase kinase 3| (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 3) (MEK kinase kinase 3) (MEKKK 3) (Germinal center kinase-related protein kinase) (GLK) Length = 894 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/60 (25%), Positives = 28/60 (46%) Frame = -2 Query: 409 GAA*SY*YLGCEPRSLCHIAYHRPFINDKHRQVASSDGLYSSSARRVHQTLYLLLFCYSC 230 GA S + GC + C ++ P D++ + +G+Y+ + +H+T LF C Sbjct: 545 GACFSKVFNGCPLKIHCASSWINPDTRDQYLIFGAEEGIYTLNLNELHETSMEQLFPRRC 604
>GHSR_PIG (Q95254) Growth hormone secretagogue receptor type 1 (GHS-R)| (GH-releasing peptide receptor) (GHRP) (Ghrelin receptor) Length = 366 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/50 (28%), Positives = 29/50 (58%) Frame = -1 Query: 209 QHTIQLVAVSTLLIRFIMCNPRLHLGKYLYYCLCLNESVVVLSIKEYTSI 60 + T++++AV ++ FI+C H+G+YL+ SV + I +Y ++ Sbjct: 259 KQTVKMLAV--VVFAFILCWLPFHVGRYLFSKSLEPGSVEIAQISQYCNL 306
>GHSR_HUMAN (Q92847) Growth hormone secretagogue receptor type 1 (GHS-R)| (GH-releasing peptide receptor) (GHRP) (Ghrelin receptor) Length = 366 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 16/84 (19%) Frame = -1 Query: 209 QHTIQLVAVSTLLIRFIMCNPRLHLGKYLY----------------YCLCLNESVVVLSI 78 + T++++AV ++ FI+C H+G+YL+ YC ++ + LS Sbjct: 259 KQTVKMLAV--VVFAFILCWLPFHVGRYLFSKSFEPGSLEIAQISQYCNLVSFVLFYLSA 316 Query: 77 KEYTSIYN*ESRPVRIQFFWIFDF 6 +YN S+ R+ F + F Sbjct: 317 AINPILYNIMSKKYRVAVFRLLGF 340
>GHSR_RAT (O08725) Growth hormone secretagogue receptor type 1 (GHS-R)| (GH-releasing peptide receptor) (GHRP) (Ghrelin receptor) Length = 364 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 16/84 (19%) Frame = -1 Query: 209 QHTIQLVAVSTLLIRFIMCNPRLHLGKYLY----------------YCLCLNESVVVLSI 78 + T++++AV ++ FI+C H+G+YL+ YC ++ + LS Sbjct: 257 KQTVKMLAV--VVFAFILCWLPFHVGRYLFSKSFEPGSLEIAQISQYCNLVSFVLFYLSA 314 Query: 77 KEYTSIYN*ESRPVRIQFFWIFDF 6 +YN S+ R+ F + F Sbjct: 315 AINPILYNIMSKKYRVAVFKLLGF 338
>GHSR_MOUSE (Q99P50) Growth hormone secretagogue receptor type 1 (GHS-R)| (GH-releasing peptide receptor) (GHRP) (Ghrelin receptor) Length = 364 Score = 27.7 bits (60), Expect = 6.8 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 16/84 (19%) Frame = -1 Query: 209 QHTIQLVAVSTLLIRFIMCNPRLHLGKYLY----------------YCLCLNESVVVLSI 78 + T++++AV ++ FI+C H+G+YL+ YC ++ + LS Sbjct: 257 KQTVKMLAV--VVFAFILCWLPFHVGRYLFSKSFEPGSLEIAQISQYCNLVSFVLFYLSA 314 Query: 77 KEYTSIYN*ESRPVRIQFFWIFDF 6 +YN S+ R+ F + F Sbjct: 315 AINPILYNIMSKKYRVAVFKLLGF 338
>M4K2_HUMAN (Q12851) Mitogen-activated protein kinase kinase kinase kinase 2| (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 2) (MEK kinase kinase 2) (MEKKK 2) (Germinal center kinase) (GC kinase) (Rab8-interacting protein) (B lymphocyte serine/threonine-pro Length = 819 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/60 (23%), Positives = 26/60 (43%) Frame = -2 Query: 409 GAA*SY*YLGCEPRSLCHIAYHRPFINDKHRQVASSDGLYSSSARRVHQTLYLLLFCYSC 230 GA S + GC R + + P D+ V + +G+Y+ + +H+ L + C Sbjct: 470 GACFSKVFNGCPLRIHAAVTWIHPVTRDQFLVVGAEEGIYTLNLHELHEDTLEKLISHRC 529
>CHOD_BREST (P22637) Cholesterol oxidase precursor (EC 1.1.3.6) (CHOD)| Length = 552 Score = 27.3 bits (59), Expect = 8.8 Identities = 15/55 (27%), Positives = 23/55 (41%) Frame = +1 Query: 124 KYFPKCSLGLHMINLINRVLTATSWIVC*NIQQTTNMNNRTRVNKGSGVLFVPNL 288 KYFP+ + GL + N+ +T W + +T G FVPN+ Sbjct: 191 KYFPRANTGLGVNNIDQAWFESTEW------YKFARTGRKTAQRSGFTTAFVPNV 239
>RHG26_HUMAN (Q9UNA1) Rho-GTPase-activating protein 26 (Oligophrenin-1-like| protein) (GTPase regulator associated with focal adhesion kinase) Length = 814 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -1 Query: 194 LVAVSTLLIRFIMCNPRLHL 135 L AV +LL+ F+ C+P LHL Sbjct: 722 LHAVFSLLVNFVPCHPNLHL 741
>ZN267_HUMAN (Q14586) Zinc finger protein 267 (Zinc finger protein HZF2)| Length = 743 Score = 27.3 bits (59), Expect = 8.8 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Frame = -2 Query: 352 AYHRPFINDKHRQVASSDG-LYSSSARRVHQTLYLLLFCYSCWSFAECF 209 +Y FI +K+ +S+ L SS+ + HQ Y L Y C F E F Sbjct: 205 SYRNVFIGEKNYHCNNSEKTLNQSSSPKNHQENYFLEKQYKCKEFEEVF 253 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,686,514 Number of Sequences: 219361 Number of extensions: 1067017 Number of successful extensions: 2127 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2126 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
