Clone Name | rbastl24a11 |
---|---|
Clone Library Name | barley_pub |
>gb|AC146522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0039A07 map near 50283S, complete sequence Length = 158158 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 acatgaataacagaacaagag 250 ||||||||||||||||||||| Sbjct: 28623 acatgaataacagaacaagag 28643
>emb|BX936312.12| Zebrafish DNA sequence from clone DKEY-204O5 in linkage group 7, complete sequence Length = 158510 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 212 acattcagcaaacgaccaacatgaa 236 ||||||||||||| ||||||||||| Sbjct: 105223 acattcagcaaactaccaacatgaa 105199 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 212 acattcagcaaacgaccaacatgaa 236 ||||||||||||| ||||||||||| Sbjct: 104779 acattcagcaaactaccaacatgaa 104755
>gb|AC102561.4| Mus musculus chromosome 7, clone RP23-201O19, complete sequence Length = 195549 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 aggcaatagtacaaatacttt 132 ||||||||||||||||||||| Sbjct: 125157 aggcaatagtacaaatacttt 125177
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 acatgaataacagaacaagag 250 ||||||||||||||||||||| Sbjct: 14283011 acatgaataacagaacaagag 14283031
>emb|AL935276.16| Zebrafish DNA sequence from clone CH211-273J2, complete sequence Length = 164481 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 212 acattcagcaaacgaccaacatgaa 236 ||||||||||||| ||||||||||| Sbjct: 49711 acattcagcaaactaccaacatgaa 49687 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 212 acattcagcaaacgaccaacatgaa 236 ||||||||||||| ||||||||||| Sbjct: 49271 acattcagcaaactaccaacatgaa 49247
>emb|BX511140.4| Zebrafish DNA sequence from clone DKEY-264G21 in linkage group 20, complete sequence Length = 166153 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 aataacagaacaagagtaaat 255 ||||||||||||||||||||| Sbjct: 90984 aataacagaacaagagtaaat 90964
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 230 acatgaataacagaacaagag 250 ||||||||||||||||||||| Sbjct: 14365013 acatgaataacagaacaagag 14365033
>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence Length = 215147 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 237 taacagaacaagagtaaataaagg 260 |||| ||||||||||||||||||| Sbjct: 76240 taacggaacaagagtaaataaagg 76263
>gb|AC110269.8| Mus musculus chromosome 1, clone RP23-322P13, complete sequence Length = 251855 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 tttcattcaaacagaggcaa 117 |||||||||||||||||||| Sbjct: 100346 tttcattcaaacagaggcaa 100365
>gb|AC021105.13| Homo sapiens BAC clone RP11-163O17 from 4, complete sequence Length = 187360 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 gaccaacatgaataacagaa 244 |||||||||||||||||||| Sbjct: 69584 gaccaacatgaataacagaa 69565
>emb|BX927177.12| Zebrafish DNA sequence from clone DKEY-78D16 in linkage group 19, complete sequence Length = 154891 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ggcaatagtacaaatacttt 132 |||||||||||||||||||| Sbjct: 94106 ggcaatagtacaaatacttt 94125
>emb|AL773525.5| Mouse DNA sequence from clone RP23-169L4 on chromosome 2, complete sequence Length = 188772 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 325 tgtcatttataaagggtctg 344 |||||||||||||||||||| Sbjct: 111132 tgtcatttataaagggtctg 111151
>gb|M10594.1|SOYNOD35G Soybean nodulin-35 (N-35) gene encoding a subunit of uricase II, complete cds Length = 4783 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 aacagaggcaatagtacaaa 126 |||||||||||||||||||| Sbjct: 2445 aacagaggcaatagtacaaa 2464
>dbj|AB002809.1| Glycine max mRNA for nodulin 35, complete cds Length = 1220 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 aacagaggcaatagtacaaa 126 |||||||||||||||||||| Sbjct: 448 aacagaggcaatagtacaaa 467 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,515,514 Number of Sequences: 3902068 Number of extensions: 4515514 Number of successful extensions: 67714 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67666 Number of HSP's gapped (non-prelim): 48 length of query: 410 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 388 effective length of database: 17,147,199,772 effective search space: 6653113511536 effective search space used: 6653113511536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)