ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP006664.1| Lotus japonicus genomic DNA, chromosome 5, clone... 46 0.053
2dbj|AP006551.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.053
3dbj|AP006422.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.053
4dbj|AP004916.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.053
5dbj|AP004907.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.053
6dbj|AP004537.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.053
7dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone... 46 0.053
8ref|XM_740754.1| Plasmodium chabaudi chabaudi carbamoyl phosphat... 42 0.82
9emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4,... 42 0.82
10gb|U97593.1| Caenorhabditis elegans cosmid C46G7, complete sequence 42 0.82
11dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.82
12emb|CR847514.13| Zebrafish DNA sequence from clone DKEYP-11D6 in... 42 0.82
13gb|AC161444.4| Mus musculus chromosome 1, clone RP23-446D9, comp... 40 3.2
14gb|AC146459.3| Pan troglodytes BAC clone CH251-229E22 from Y, co... 40 3.2
15gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, com... 40 3.2
16gb|AC124763.4| Mus musculus BAC clone RP23-158P17 from 12, compl... 40 3.2
17dbj|BS000617.1| Pan troglodytes chromosome Y clone:PTB-206A19, c... 40 3.2
18dbj|BS000555.1| Pan troglodytes chromosome Y clone:PTB-439G17, c... 40 3.2
19gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 3.2
20gb|AC010048.5| Drosophila melanogaster 3L BAC RP98-5B23 (Roswell... 40 3.2
21gb|AC008589.6| Homo sapiens chromosome 5 clone CTC-574I1, comple... 40 3.2
22gb|AC008927.6| Homo sapiens chromosome 5 clone CTD-2287O23, comp... 40 3.2
23gb|AC102488.11| Mus musculus chromosome 1, clone RP24-496O18, co... 40 3.2
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
25gb|AC093894.2| Homo sapiens BAC clone RP11-714E5 from 2, complet... 40 3.2
26gb|AC008779.5|AC008779 Homo sapiens chromosome 5 clone CTD-2023H... 40 3.2
27gb|AC009494.2|AC009494 Homo sapiens BAC clone RP11-450B24 from Y... 40 3.2
28gb|AC064848.5| Homo sapiens BAC clone RP11-81F3 from 2, complete... 40 3.2
29dbj|AP006526.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
30emb|AJ575247.1|LJA575247 Lotus japonicus nfr1 gene for Nod-facto... 40 3.2
31emb|AJ575246.1|LJA575246 Lotus japonicus nfr1 gene for Nod-facto... 40 3.2
32gb|AE003535.3| Drosophila melanogaster chromosome 3L, section 50... 40 3.2
33gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome... 40 3.2
34dbj|AP001085.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 3.2
35dbj|AP000577.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 3.2
36gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complet... 40 3.2
37emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 i... 40 3.2
38gb|AC156158.1| Homo sapiens chromosome 10 clone WI2-1708O12, com... 40 3.2
39dbj|AP006536.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 3.2
40dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 3.2
41dbj|AP004515.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 3.2 
>dbj|AP006664.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT01C14, TM0359,
              complete sequence
          Length = 112181

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 157    ttgaggcatggtggtgccatagggttt 183
              |||||||||||||||||||| ||||||
Sbjct: 100307 ttgaggcatggtggtgccatggggttt 100333
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>dbj|AP006551.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT35D17, TM0104,
           complete sequence
          Length = 96208

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 157 ttgaggcatggtggtgccatagggttt 183
           |||||||||||||||||||| ||||||
Sbjct: 938 ttgaggcatggtggtgccatggggttt 912
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>dbj|AP006422.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT33E11, TM0310b,
             complete sequence
          Length = 93261

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 157   ttgaggcatggtggtgccatagggttt 183
             |||||||||||||||||||| ||||||
Sbjct: 27548 ttgaggcatggtggtgccatggggttt 27522
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>dbj|AP004916.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18E24, TM0074,
             complete sequence
          Length = 131741

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 157   ttgaggcatggtggtgccatagggttt 183
             |||||||||||||||||||| ||||||
Sbjct: 62116 ttgaggcatggtggtgccatggggttt 62142
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>dbj|AP004907.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11D15, TM0065,
             complete sequence
          Length = 115046

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 157   ttgaggcatggtggtgccatagggttt 183
             |||||||||||||||||||| ||||||
Sbjct: 32698 ttgaggcatggtggtgccatggggttt 32672
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>dbj|AP004537.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04C07, TM0098a,
            complete sequence
          Length = 33254

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 157  ttgaggcatggtggtgccatagggttt 183
            |||||||||||||||||||| ||||||
Sbjct: 1358 ttgaggcatggtggtgccatggggttt 1384
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>dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14P20, TM0087,
             complete sequence
          Length = 124300

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 157   ttgaggcatggtggtgccatagggttt 183
             |||||||||||||||||||| ||||||
Sbjct: 35680 ttgaggcatggtggtgccatggggttt 35654
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>ref|XM_740754.1| Plasmodium chabaudi chabaudi carbamoyl phosphate synthetase
            (PC000179.01.0) partial mRNA
          Length = 6318

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 9    ctttaatcaacaaatttcccaacaa 33
            |||||||||| ||||||||||||||
Sbjct: 3561 ctttaatcaagaaatttcccaacaa 3585
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>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
             complete sequence
          Length = 96079

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    tgcgaaagcatattccaacaa 81
             |||||||||||||||||||||
Sbjct: 55392 tgcgaaagcatattccaacaa 55412
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>gb|U97593.1| Caenorhabditis elegans cosmid C46G7, complete sequence
          Length = 43585

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    aacaaatttcccaacaaaata 37
             |||||||||||||||||||||
Sbjct: 35984 aacaaatttcccaacaaaata 36004
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 61       tgcgaaagcatattccaacaa 81
                |||||||||||||||||||||
Sbjct: 20952160 tgcgaaagcatattccaacaa 20952180
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>emb|CR847514.13| Zebrafish DNA sequence from clone DKEYP-11D6 in linkage group 3, complete
              sequence
          Length = 165569

 Score = 42.1 bits (21), Expect = 0.82
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 83     acaggcgatacatcaaaatca 103
              |||||||||||||||||||||
Sbjct: 108976 acaggcgatacatcaaaatca 108956
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>gb|AC161444.4| Mus musculus chromosome 1, clone RP23-446D9, complete sequence
          Length = 182353

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     acaaaataaaatgctgtaca 49
              ||||||||||||||||||||
Sbjct: 173742 acaaaataaaatgctgtaca 173761
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>gb|AC146459.3| Pan troglodytes BAC clone CH251-229E22 from Y, complete sequence
          Length = 191428

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 17    aacaaatttcccaacaaaataaaa 40
             |||||| |||||||||||||||||
Sbjct: 60379 aacaaaattcccaacaaaataaaa 60402
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>gb|AC147477.1| Pan troglodytes BAC clone CH251-483E9 from Y, complete sequence
          Length = 213500

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 17     aacaaatttcccaacaaaataaaa 40
              |||||| |||||||||||||||||
Sbjct: 207843 aacaaaattcccaacaaaataaaa 207866
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>gb|AC124763.4| Mus musculus BAC clone RP23-158P17 from 12, complete sequence
          Length = 208489

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   aattccaattggccagtatt 130
             ||||||||||||||||||||
Sbjct: 67319 aattccaattggccagtatt 67338
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>dbj|BS000617.1| Pan troglodytes chromosome Y clone:PTB-206A19, complete sequences
          Length = 169081

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 17     aacaaatttcccaacaaaataaaa 40
              |||||| |||||||||||||||||
Sbjct: 122338 aacaaaattcccaacaaaataaaa 122315
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>dbj|BS000555.1| Pan troglodytes chromosome Y clone:PTB-439G17, complete sequences
          Length = 160463

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 17     aacaaatttcccaacaaaataaaa 40
              |||||| |||||||||||||||||
Sbjct: 158727 aacaaaattcccaacaaaataaaa 158704
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 17       aacaaatttcccaacaaaataaaa 40
                |||||| |||||||||||||||||
Sbjct: 14964843 aacaaaattcccaacaaaataaaa 14964866
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>gb|AC010048.5| Drosophila melanogaster 3L BAC RP98-5B23 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 175316

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    tttaatcaacaaatttccca 29
             ||||||||||||||||||||
Sbjct: 86779 tttaatcaacaaatttccca 86760
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>gb|AC008589.6| Homo sapiens chromosome 5 clone CTC-574I1, complete sequence
          Length = 121272

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   caacaaaataaaatgctgta 47
            ||||||||||||||||||||
Sbjct: 7482 caacaaaataaaatgctgta 7463
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>gb|AC008927.6| Homo sapiens chromosome 5 clone CTD-2287O23, complete sequence
          Length = 165604

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    caacaaaataaaatgctgta 47
             ||||||||||||||||||||
Sbjct: 13530 caacaaaataaaatgctgta 13511
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>gb|AC102488.11| Mus musculus chromosome 1, clone RP24-496O18, complete sequence
          Length = 127076

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     acaaaataaaatgctgtaca 49
              ||||||||||||||||||||
Sbjct: 112743 acaaaataaaatgctgtaca 112724
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 2        tccatcactttaatcaacaa 21
                ||||||||||||||||||||
Sbjct: 11403331 tccatcactttaatcaacaa 11403350
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>gb|AC093894.2| Homo sapiens BAC clone RP11-714E5 from 2, complete sequence
          Length = 105489

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   caacctctgcctccctctta 248
             ||||||||||||||||||||
Sbjct: 42361 caacctctgcctccctctta 42342
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>gb|AC008779.5|AC008779 Homo sapiens chromosome 5 clone CTD-2023H18, complete sequence
          Length = 123275

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    caacaaaataaaatgctgta 47
             ||||||||||||||||||||
Sbjct: 49453 caacaaaataaaatgctgta 49434
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>gb|AC009494.2|AC009494 Homo sapiens BAC clone RP11-450B24 from Y, complete sequence
          Length = 188314

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 17     aacaaatttcccaacaaaataaaa 40
              |||||| |||||||||||||||||
Sbjct: 102679 aacaaaattcccaacaaaataaaa 102656
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>gb|AC064848.5| Homo sapiens BAC clone RP11-81F3 from 2, complete sequence
          Length = 135809

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    tttggcaacctctgcctccc 243
              ||||||||||||||||||||
Sbjct: 119759 tttggcaacctctgcctccc 119740
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>dbj|AP006526.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0591A03
          Length = 147043

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     tccatcactttaatcaacaa 21
             ||||||||||||||||||||
Sbjct: 37019 tccatcactttaatcaacaa 37038
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>emb|AJ575247.1|LJA575247 Lotus japonicus nfr1 gene for Nod-factor receptor 1b, exons 1-12
          Length = 10253

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 157  ttgaggcatggtggtgccat 176
            ||||||||||||||||||||
Sbjct: 1966 ttgaggcatggtggtgccat 1985
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>emb|AJ575246.1|LJA575246 Lotus japonicus nfr1 gene for Nod-factor receptor 1a, exons 1-12
          Length = 10253

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 157  ttgaggcatggtggtgccat 176
            ||||||||||||||||||||
Sbjct: 1966 ttgaggcatggtggtgccat 1985
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>gb|AE003535.3| Drosophila melanogaster chromosome 3L, section 50 of 83 of the complete
              sequence
          Length = 278708

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     tttaatcaacaaatttccca 29
              ||||||||||||||||||||
Sbjct: 251673 tttaatcaacaaatttccca 251654
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>gb|AC115296.6| Mus musculus BAC clone RP23-195I8 from chromosome 12, complete sequence
          Length = 211561

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   aattccaattggccagtatt 130
             ||||||||||||||||||||
Sbjct: 35272 aattccaattggccagtatt 35253
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>dbj|AP001085.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-632K5, complete
            sequence
          Length = 175747

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   aaataaaatgctgtacagtc 52
            ||||||||||||||||||||
Sbjct: 7689 aaataaaatgctgtacagtc 7708
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>dbj|AP000577.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-51L7, complete
             sequence
          Length = 122381

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    aaataaaatgctgtacagtc 52
             ||||||||||||||||||||
Sbjct: 83287 aaataaaatgctgtacagtc 83306
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>gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complete sequence
          Length = 195371

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    atttcccaacaaaataaaat 41
             ||||||||||||||||||||
Sbjct: 70887 atttcccaacaaaataaaat 70906
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>emb|AL928901.8| Zebrafish DNA sequence from clone CH211-155M12 in linkage group 5,
             complete sequence
          Length = 145957

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   tgaagcaaatggtacaacaa 154
             ||||||||||||||||||||
Sbjct: 22996 tgaagcaaatggtacaacaa 23015
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>gb|AC156158.1| Homo sapiens chromosome 10 clone WI2-1708O12, complete sequence
          Length = 43308

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   gcaacctctgcctccctctt 247
             ||||||||||||||||||||
Sbjct: 33975 gcaacctctgcctccctctt 33994
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>dbj|AP006536.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT05B16, TM0545,
             complete sequence
          Length = 66136

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   ttgaggcatggtggtgccat 176
             ||||||||||||||||||||
Sbjct: 51933 ttgaggcatggtggtgccat 51952
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>dbj|AP006117.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT09H13, TM0200,
             complete sequence
          Length = 91393

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 160   aggcatggtggtgccatagggttt 183
             ||||||||||||||||| ||||||
Sbjct: 39695 aggcatggtggtgccatggggttt 39672
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>dbj|AP004515.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT04F23, TM0044a,
             complete sequence
          Length = 65620

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   ttgaggcatggtggtgccat 176
             ||||||||||||||||||||
Sbjct: 60638 ttgaggcatggtggtgccat 60657


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,864,366
Number of Sequences: 3902068
Number of extensions: 3864366
Number of successful extensions: 294422
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 294146
Number of HSP's gapped (non-prelim): 276
length of query: 251
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 229
effective length of database: 17,147,199,772
effective search space: 3926708747788
effective search space used: 3926708747788
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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