ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476056.1| Oryza sativa (japonica cultivar-group), predic... 52 0.001
2gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
3gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome... 52 0.001
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
5gb|U28944.1| Caenorhabditis elegans cosmid C18A3, complete sequence 46 0.091
6gb|AC121852.4| Mus musculus chromosome 3 clone RP24-93P18, compl... 44 0.36
7gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, compl... 42 1.4
8gb|AC104304.2| Homo sapiens chromosome 3 clone RP11-509I21, comp... 42 1.4
9gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell ... 42 1.4
10gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell ... 42 1.4
11gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome ... 42 1.4
12dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticu... 42 1.4
13gb|AC156798.2| Mus musculus BAC clone RP23-378B3 from chromosome... 42 1.4
14gb|AF508798.1| Homo sapiens lactoferrin gene, exons 1 through 6 ... 42 1.4
15gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 ... 42 1.4
16emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chr... 42 1.4
17ref|NM_101556.3| Arabidopsis thaliana unknown protein AT1G16950 ... 40 5.6
18gb|AC147312.3| Pan troglodytes BAC clone RP43-50K12 from 7, comp... 40 5.6
19gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 5.6
20gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 5.6
21gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 5.6
22gb|AC124412.3| Mus musculus BAC clone RP24-274J3 from chromosome... 40 5.6
23gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, comp... 40 5.6
24gb|AC006148.3| Homo sapiens PAC clone RP5-902E20 from 7, complet... 40 5.6
25emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 5.6
26emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, ... 40 5.6
27emb|BX537117.6| Zebrafish DNA sequence from clone CH211-281N15 i... 40 5.6
28dbj|AP001204.1| Rhodococcus equi plasmid pREAT701 DNA, complete ... 40 5.6
29dbj|AK222308.1| Ciona intestinalis cDNA, clone:cibd008d11, full ... 40 5.6
30gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342... 40 5.6
31gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosom... 40 5.6
32emb|BX005229.30| Zebrafish DNA sequence from clone DKEY-21D17 in... 40 5.6
33dbj|AK076827.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.6
34gb|AF116907.2|AF116907 Rhodococcus equi virulence plasmid, compl... 40 5.6
35gb|AC154245.2| Mus musculus BAC clone RP24-326A24 from chromosom... 40 5.6
36dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 5.6
37gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.6
38gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17... 40 5.6
39gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I... 40 5.6
40dbj|AK174589.1| Ciona intestinalis cDNA, clone:cies001j05, full ... 40 5.6
41emb|CR450733.7| Zebrafish DNA sequence from clone DKEYP-86E4 in ... 40 5.6
42emb|BX927356.22| Zebrafish DNA sequence from clone DKEY-54K20 in... 40 5.6
43gb|AF128395.1|F5K24 Arabidopsis thaliana BAC F5K24 40 5.6
44gb|AC006268.1|AC006268 Arabidopsis thaliana BAC T24G23 from chro... 40 5.6
45gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 5.6
46emb|AJ539424.1|BPR539424 Beta vulgaris transgenic Beetle1 retrot... 40 5.6 
>ref|XM_476056.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3354

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 360  accttccagtacttcccgtccccggcgcagcacttgcc 397
            |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 3212 accttccagtacttgccgtcgccggcgcaccacttgcc 3175



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 305  cgacgccgagctgtacttctc 325
            |||||||||||||||||||||
Sbjct: 3267 cgacgccgagctgtacttctc 3247
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>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 360   accttccagtacttcccgtccccggcgcagcacttgcc 397
             |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 43812 accttccagtacttgccgtcgccggcgcaccacttgcc 43775



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 305   cgacgccgagctgtacttctc 325
             |||||||||||||||||||||
Sbjct: 43867 cgacgccgagctgtacttctc 43847
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>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
              complete sequence
          Length = 136713

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 360    accttccagtacttcccgtccccggcgcagcacttgcc 397
              |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 132027 accttccagtacttgccgtcgccggcgcaccacttgcc 131990



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 305    cgacgccgagctgtacttctc 325
              |||||||||||||||||||||
Sbjct: 132082 cgacgccgagctgtacttctc 132062
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 360     accttccagtacttcccgtccccggcgcagcacttgcc 397
               |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 4157333 accttccagtacttgccgtcgccggcgcaccacttgcc 4157296



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 305     cgacgccgagctgtacttctc 325
               |||||||||||||||||||||
Sbjct: 4157388 cgacgccgagctgtacttctc 4157368
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>gb|U28944.1| Caenorhabditis elegans cosmid C18A3, complete sequence
          Length = 42405

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 121   caacaaaacttagagaaacgaga 143
             |||||||||||||||||||||||
Sbjct: 23537 caacaaaacttagagaaacgaga 23559
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>gb|AC121852.4| Mus musculus chromosome 3 clone RP24-93P18, complete sequence
          Length = 206414

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 114    aacacaccaacaaaacttagag 135
              ||||||||||||||||||||||
Sbjct: 100535 aacacaccaacaaaacttagag 100556
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>gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, complete sequence
          Length = 185437

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 188    acagccacccatacacaaaca 208
              |||||||||||||||||||||
Sbjct: 125559 acagccacccatacacaaaca 125539
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>gb|AC104304.2| Homo sapiens chromosome 3 clone RP11-509I21, complete sequence
          Length = 202933

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 188  acagccacccatacacaaaca 208
            |||||||||||||||||||||
Sbjct: 1416 acagccacccatacacaaaca 1396
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>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 160440

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   tagagaaacgagaacaaaagg 151
             |||||||||||||||||||||
Sbjct: 77324 tagagaaacgagaacaaaagg 77344
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>gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 187921

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   tagagaaacgagaacaaaagg 151
             |||||||||||||||||||||
Sbjct: 12518 tagagaaacgagaacaaaagg 12538
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>gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome 12, complete sequence
          Length = 225198

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 193   cacccatacacaaacattttt 213
             |||||||||||||||||||||
Sbjct: 13462 cacccatacacaaacattttt 13442
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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA,
              complete genome
          Length = 2516575

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 82     ataattaaaaacagctttagc 102
              |||||||||||||||||||||
Sbjct: 435955 ataattaaaaacagctttagc 435935
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>gb|AC156798.2| Mus musculus BAC clone RP23-378B3 from chromosome 12, complete sequence
          Length = 220547

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 193   cacccatacacaaacattttt 213
             |||||||||||||||||||||
Sbjct: 16245 cacccatacacaaacattttt 16265
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>gb|AF508798.1| Homo sapiens lactoferrin gene, exons 1 through 6 and partial cds
          Length = 19899

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 188  acagccacccatacacaaaca 208
            |||||||||||||||||||||
Sbjct: 5171 acagccacccatacacaaaca 5191
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>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete
             sequence
          Length = 302665

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 131   tagagaaacgagaacaaaagg 151
             |||||||||||||||||||||
Sbjct: 94445 tagagaaacgagaacaaaagg 94465
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>emb|AL833781.5| Mouse DNA sequence from clone RP23-447J12 on chromosome 4, complete
             sequence
          Length = 165700

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 106   agatgaagaacacaccaacaa 126
             |||||||||||||||||||||
Sbjct: 24159 agatgaagaacacaccaacaa 24139
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>ref|NM_101556.3| Arabidopsis thaliana unknown protein AT1G16950 mRNA, complete cds
          Length = 551

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 197 catacacaaacatttttgagaaga 220
           |||||||||||||| |||||||||
Sbjct: 469 catacacaaacattcttgagaaga 446
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>gb|AC147312.3| Pan troglodytes BAC clone RP43-50K12 from 7, complete sequence
          Length = 214157

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    tcatttaatcatctgaagaa 51
             ||||||||||||||||||||
Sbjct: 80525 tcatttaatcatctgaagaa 80544
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     acgccgagctgtacttctcc 326
               ||||||||||||||||||||
Sbjct: 1697490 acgccgagctgtacttctcc 1697509
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 307     acgccgagctgtacttctcc 326
               ||||||||||||||||||||
Sbjct: 1527150 acgccgagctgtacttctcc 1527169
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     acgccgagctgtacttctcc 326
               ||||||||||||||||||||
Sbjct: 4391754 acgccgagctgtacttctcc 4391735
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>gb|AC124412.3| Mus musculus BAC clone RP24-274J3 from chromosome 9, complete sequence
          Length = 175945

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    tttttgagaagaaaccacag 228
              ||||||||||||||||||||
Sbjct: 168367 tttttgagaagaaaccacag 168386
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>gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, complete sequence
          Length = 256556

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 133    gagaaacgagaacaaaaggc 152
              ||||||||||||||||||||
Sbjct: 111410 gagaaacgagaacaaaaggc 111429
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>gb|AC006148.3| Homo sapiens PAC clone RP5-902E20 from 7, complete sequence
          Length = 121110

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    tcatttaatcatctgaagaa 51
             ||||||||||||||||||||
Sbjct: 13820 tcatttaatcatctgaagaa 13801
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>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 8/10
          Length = 349136

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    cttccagtacttcccgtccc 381
              ||||||||||||||||||||
Sbjct: 133877 cttccagtacttcccgtccc 133858
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>emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 20
          Length = 196517

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   agatgaagaacacaccaaca 125
             ||||||||||||||||||||
Sbjct: 42898 agatgaagaacacaccaaca 42917



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   agatgaagaacacaccaaca 125
             ||||||||||||||||||||
Sbjct: 10687 agatgaagaacacaccaaca 10706
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>emb|BX537117.6| Zebrafish DNA sequence from clone CH211-281N15 in linkage group 17,
             complete sequence
          Length = 161999

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    tgataattaaaaacagcttt 99
             ||||||||||||||||||||
Sbjct: 33397 tgataattaaaaacagcttt 33416
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>dbj|AP001204.1| Rhodococcus equi plasmid pREAT701 DNA, complete sequence
          Length = 80610

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   acgctgctctccgacgccga 313
             ||||||||||||||||||||
Sbjct: 54339 acgctgctctccgacgccga 54320
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>dbj|AK222308.1| Ciona intestinalis cDNA, clone:cibd008d11, full insert sequence
          Length = 2874

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  aacaaaacttagagaaacga 141
            ||||||||||||||||||||
Sbjct: 1559 aacaaaacttagagaaacga 1578
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>gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342N3, complete sequence
          Length = 210913

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   tttttgagaagaaaccacag 228
             ||||||||||||||||||||
Sbjct: 59070 tttttgagaagaaaccacag 59089
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>gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosome 6, complete sequence
          Length = 225957

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   gagaaacgagaacaaaaggc 152
             ||||||||||||||||||||
Sbjct: 37175 gagaaacgagaacaaaaggc 37156
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>emb|BX005229.30| Zebrafish DNA sequence from clone DKEY-21D17 in linkage group 17,
             complete sequence
          Length = 94988

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    aaaaacagctttagcattag 107
             ||||||||||||||||||||
Sbjct: 57887 aaaaacagctttagcattag 57906
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>dbj|AK076827.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930502C15 product:homeodomain
           interacting protein kinase 2, full insert sequence
          Length = 875

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 gagaaacgagaacaaaaggc 152
           ||||||||||||||||||||
Sbjct: 106 gagaaacgagaacaaaaggc 125
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>gb|AF116907.2|AF116907 Rhodococcus equi virulence plasmid, complete sequence
          Length = 80609

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   acgctgctctccgacgccga 313
             ||||||||||||||||||||
Sbjct: 54338 acgctgctctccgacgccga 54319
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>gb|AC154245.2| Mus musculus BAC clone RP24-326A24 from chromosome 14, complete
             sequence
          Length = 185892

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 82    ataattaaaaacagctttagcatt 105
             ||||||||||||||| ||||||||
Sbjct: 92367 ataattaaaaacagcattagcatt 92344
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 362     cttccagtacttcccgtccc 381
               ||||||||||||||||||||
Sbjct: 2606703 cttccagtacttcccgtccc 2606684
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     acgccgagctgtacttctcc 326
               ||||||||||||||||||||
Sbjct: 4111372 acgccgagctgtacttctcc 4111353
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>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence,
            complete sequence
          Length = 90498

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 197  catacacaaacatttttgagaaga 220
            |||||||||||||| |||||||||
Sbjct: 4459 catacacaaacattcttgagaaga 4482
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>gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I1 genomic sequence, complete
             sequence
          Length = 93677

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 197   catacacaaacatttttgagaaga 220
             |||||||||||||| |||||||||
Sbjct: 51156 catacacaaacattcttgagaaga 51179
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>dbj|AK174589.1| Ciona intestinalis cDNA, clone:cies001j05, full insert sequence
          Length = 2603

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  aacaaaacttagagaaacga 141
            ||||||||||||||||||||
Sbjct: 1243 aacaaaacttagagaaacga 1262
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>emb|CR450733.7| Zebrafish DNA sequence from clone DKEYP-86E4 in linkage group 18,
             complete sequence
          Length = 208614

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    tgataattaaaaacagcttt 99
             ||||||||||||||||||||
Sbjct: 62196 tgataattaaaaacagcttt 62177
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>emb|BX927356.22| Zebrafish DNA sequence from clone DKEY-54K20 in linkage group 17,
              complete sequence
          Length = 204195

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     aaaaacagctttagcattag 107
              ||||||||||||||||||||
Sbjct: 163019 aaaaacagctttagcattag 163038
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>gb|AF128395.1|F5K24 Arabidopsis thaliana BAC F5K24
          Length = 109786

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    agatgaagaacacaccaaca 125
              ||||||||||||||||||||
Sbjct: 100805 agatgaagaacacaccaaca 100824



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   agatgaagaacacaccaaca 125
             ||||||||||||||||||||
Sbjct: 68597 agatgaagaacacaccaaca 68616
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>gb|AC006268.1|AC006268 Arabidopsis thaliana BAC T24G23 from chromosome IV near 21 cM, complete
             sequence
          Length = 105420

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   agatgaagaacacaccaaca 125
             ||||||||||||||||||||
Sbjct: 19537 agatgaagaacacaccaaca 19556
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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 90      aaacagctttagcattagat 109
               ||||||||||||||||||||
Sbjct: 1492861 aaacagctttagcattagat 1492842
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>emb|AJ539424.1|BPR539424 Beta vulgaris transgenic Beetle1 retrotransposon
          Length = 6736

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   tcatctgaagaaggttttcc 59
            ||||||||||||||||||||
Sbjct: 3638 tcatctgaagaaggttttcc 3657


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,955,358
Number of Sequences: 3902068
Number of extensions: 3955358
Number of successful extensions: 83284
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83021
Number of HSP's gapped (non-prelim): 263
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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