ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl24a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
2dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
3dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic D... 151 2e-33
4dbj|AK101953.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
5dbj|AK071267.1| Oryza sativa (japonica cultivar-group) cDNA clon... 151 2e-33
6gb|AY103884.1| Zea mays PCO090977 mRNA sequence 115 1e-22
7gb|BT016671.1| Zea mays clone Contig504 mRNA sequence 88 3e-14
8gb|AC159336.13| Mus musculus 10 BAC RP24-430N21 (Roswell Park Ca... 46 0.096
9gb|AC153852.9| Mus musculus 10 BAC RP23-136F8 (Roswell Park Canc... 46 0.096
10gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell ... 44 0.38
11gb|AY217336.1| Papaver somniferum S-adenosyl-L-methionine:coclau... 42 1.5
12ref|XM_686143.1| PREDICTED: Danio rerio similar to Heparin sulfa... 42 1.5
13gb|AC154659.2| Mus musculus BAC clone RP24-269K6 from chromosome... 42 1.5
14emb|BX649358.3| Zebrafish DNA sequence from clone CH211-69P6 in ... 42 1.5
15emb|BX247881.6| Zebrafish DNA sequence from clone DKEY-10M1 in l... 42 1.5
16gb|AE000661.1|HUAE000661 Homo sapiens T-cell receptor alpha delt... 40 5.9
17gb|AC124557.4| Mus musculus BAC clone RP23-247H15 from chromosom... 40 5.9
18emb|AL158064.16| Human DNA sequence from clone RP11-470M1 on chr... 40 5.9
19gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.9
20emb|AL139148.12| Human DNA sequence from clone RP4-630J13 on chr... 40 5.9
21emb|BX004866.22| Mouse DNA sequence from clone RP23-360A7 on chr... 40 5.9
22gb|AC098616.2| Homo sapiens chromosome 3 clone RP11-279I18, comp... 40 5.9
23gb|AC092503.2| Homo sapiens chromosome 3 clone RP11-539L2, compl... 40 5.9
24ref|XM_688792.1| PREDICTED: Danio rerio similar to bloodthirsty ... 40 5.9
25dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
26gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, co... 40 5.9
27gb|AC131943.1| Homo sapiens BAC clone CTD-2242C10 from 4, comple... 40 5.9
28gb|AC007744.2| Homo sapiens BAC clone RP11-482H16 from 2, comple... 40 5.9
29gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Ca... 40 5.9
30emb|AL929191.9| Mouse DNA sequence from clone RP23-330G15 on chr... 40 5.9
31gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
32emb|AL928919.12| Mouse DNA sequence from clone RP24-239N23 on ch... 40 5.9
33emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.9
34gb|AC133940.4| Mus musculus BAC clone RP23-433D1 from 16, comple... 40 5.9
35ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus ... 40 5.9
36dbj|AP000864.4| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 5.9 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  151 bits (76), Expect = 2e-33
 Identities = 124/140 (88%)
 Strand = Plus / Minus

                                                                            
Query: 301      cttttgatccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgct 360
                |||| ||||| ||||||||||| || |||||||||||||||||||||  |||||||||||
Sbjct: 26026981 ctttcgatccaaaaggcagttagatatcaaggggttgcctcaagaacatctccatttgct 26026922

                                                                            
Query: 361      tcgccctagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctc 420
                ||||||||||| |||||||||| ||||||||| |||||||||||| ||| || || ||||
Sbjct: 26026921 tcgccctagtcttgatcgacatatcaaacaccttctgcccaaattgaataactagccctc 26026862

                                    
Query: 421      ccatgatactctggtcaatc 440
                ||||||| || | |||||||
Sbjct: 26026861 ccatgatgctgtagtcaatc 26026842



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/84 (84%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                            
Query: 180      cacaagacaaaataaaacagagtgccgttctcttgtaaaggaaagcttttatttcaagac 239
                ||||| |||| |||||||||||||  ||||||||||||| |||    |||||||||||||
Sbjct: 26027090 cacaaaacaagataaaacagagtgttgttctcttgtaaacgaa--gatttatttcaagac 26027033

                                        
Query: 240      cacatcgaagaagcagacatgagg 263
                || ||| ||| | |||||||||||
Sbjct: 26027032 catatcaaagtaacagacatgagg 26027009
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>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1226_A12
          Length = 113025

 Score =  151 bits (76), Expect = 2e-33
 Identities = 124/140 (88%)
 Strand = Plus / Minus

                                                                         
Query: 301   cttttgatccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgct 360
             |||| ||||| ||||||||||| || |||||||||||||||||||||  |||||||||||
Sbjct: 64839 ctttcgatccaaaaggcagttagatatcaaggggttgcctcaagaacatctccatttgct 64780

                                                                         
Query: 361   tcgccctagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctc 420
             ||||||||||| |||||||||| ||||||||| |||||||||||| ||| || || ||||
Sbjct: 64779 tcgccctagtcttgatcgacatatcaaacaccttctgcccaaattgaataactagccctc 64720

                                 
Query: 421   ccatgatactctggtcaatc 440
             ||||||| || | |||||||
Sbjct: 64719 ccatgatgctgtagtcaatc 64700



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/84 (84%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                         
Query: 180   cacaagacaaaataaaacagagtgccgttctcttgtaaaggaaagcttttatttcaagac 239
             ||||| |||| |||||||||||||  ||||||||||||| |||    |||||||||||||
Sbjct: 64948 cacaaaacaagataaaacagagtgttgttctcttgtaaacgaa--gatttatttcaagac 64891

                                     
Query: 240   cacatcgaagaagcagacatgagg 263
             || ||| ||| | |||||||||||
Sbjct: 64890 catatcaaagtaacagacatgagg 64867
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>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0062J02
          Length = 151636

 Score =  151 bits (76), Expect = 2e-33
 Identities = 124/140 (88%)
 Strand = Plus / Minus

                                                                        
Query: 301  cttttgatccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgct 360
            |||| ||||| ||||||||||| || |||||||||||||||||||||  |||||||||||
Sbjct: 6226 ctttcgatccaaaaggcagttagatatcaaggggttgcctcaagaacatctccatttgct 6167

                                                                        
Query: 361  tcgccctagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctc 420
            ||||||||||| |||||||||| ||||||||| |||||||||||| ||| || || ||||
Sbjct: 6166 tcgccctagtcttgatcgacatatcaaacaccttctgcccaaattgaataactagccctc 6107

                                
Query: 421  ccatgatactctggtcaatc 440
            ||||||| || | |||||||
Sbjct: 6106 ccatgatgctgtagtcaatc 6087



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/84 (84%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                        
Query: 180  cacaagacaaaataaaacagagtgccgttctcttgtaaaggaaagcttttatttcaagac 239
            ||||| |||| |||||||||||||  ||||||||||||| |||    |||||||||||||
Sbjct: 6335 cacaaaacaagataaaacagagtgttgttctcttgtaaacgaa--gatttatttcaagac 6278

                                    
Query: 240  cacatcgaagaagcagacatgagg 263
            || ||| ||| | |||||||||||
Sbjct: 6277 catatcaaagtaacagacatgagg 6254
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>dbj|AK101953.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075I24, full
            insert sequence
          Length = 2362

 Score =  151 bits (76), Expect = 2e-33
 Identities = 124/140 (88%)
 Strand = Plus / Minus

                                                                        
Query: 301  cttttgatccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgct 360
            |||| ||||| ||||||||||| || |||||||||||||||||||||  |||||||||||
Sbjct: 2192 ctttcgatccaaaaggcagttagatatcaaggggttgcctcaagaacatctccatttgct 2133

                                                                        
Query: 361  tcgccctagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctc 420
            ||||||||||| |||||||||| ||||||||| |||||||||||| ||| || || ||||
Sbjct: 2132 tcgccctagtcttgatcgacatatcaaacaccttctgcccaaattgaataactagccctc 2073

                                
Query: 421  ccatgatactctggtcaatc 440
            ||||||| || | |||||||
Sbjct: 2072 ccatgatgctgtagtcaatc 2053



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/84 (84%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                        
Query: 180  cacaagacaaaataaaacagagtgccgttctcttgtaaaggaaagcttttatttcaagac 239
            ||||| |||| |||||||||||||  ||||||||||||| |||    |||||||||||||
Sbjct: 2301 cacaaaacaagataaaacagagtgttgttctcttgtaaacgaa--gatttatttcaagac 2244

                                    
Query: 240  cacatcgaagaagcagacatgagg 263
            || ||| ||| | |||||||||||
Sbjct: 2243 catatcaaagtaacagacatgagg 2220
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>dbj|AK071267.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086I22, full
           insert sequence
          Length = 1044

 Score =  151 bits (76), Expect = 2e-33
 Identities = 124/140 (88%)
 Strand = Plus / Minus

                                                                       
Query: 301 cttttgatccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgct 360
           |||| ||||| ||||||||||| || |||||||||||||||||||||  |||||||||||
Sbjct: 838 ctttcgatccaaaaggcagttagatatcaaggggttgcctcaagaacatctccatttgct 779

                                                                       
Query: 361 tcgccctagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctc 420
           ||||||||||| |||||||||| ||||||||| |||||||||||| ||| || || ||||
Sbjct: 778 tcgccctagtcttgatcgacatatcaaacaccttctgcccaaattgaataactagccctc 719

                               
Query: 421 ccatgatactctggtcaatc 440
           ||||||| || | |||||||
Sbjct: 718 ccatgatgctgtagtcaatc 699



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 71/84 (84%), Gaps = 2/84 (2%)
 Strand = Plus / Minus

                                                                       
Query: 180 cacaagacaaaataaaacagagtgccgttctcttgtaaaggaaagcttttatttcaagac 239
           ||||| |||| |||||||||||||  ||||||||||||| |||    |||||||||||||
Sbjct: 947 cacaaaacaagataaaacagagtgttgttctcttgtaaacgaa--gatttatttcaagac 890

                                   
Query: 240 cacatcgaagaagcagacatgagg 263
           || ||| ||| | |||||||||||
Sbjct: 889 catatcaaagtaacagacatgagg 866
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>gb|AY103884.1| Zea mays PCO090977 mRNA sequence
          Length = 1134

 Score =  115 bits (58), Expect = 1e-22
 Identities = 115/134 (85%)
 Strand = Plus / Minus

                                                                       
Query: 307 atccgaaaggcagttacatgtcaaggggttgcctcaagaacgactccatttgcttcgccc 366
           |||| |||||| |||| | |||||| |||||||||||||||| |||||||||||||||||
Sbjct: 836 atccaaaaggctgttagaagtcaagtggttgcctcaagaacgcctccatttgcttcgccc 777

                                                                       
Query: 367 tagtcctgatcgacatgtcaaacaccctctgcccaaattcaatcaccagtcctcccatga 426
           |  ||||||| || || |||| |||| ||||||| ||||||||||| | |||||||||||
Sbjct: 776 tgttcctgattgagatatcaagcaccttctgcccgaattcaatcactaatcctcccatga 717

                         
Query: 427 tactctggtcaatc 440
           | || | |||||||
Sbjct: 716 tgctgtagtcaatc 703
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>gb|BT016671.1| Zea mays clone Contig504 mRNA sequence
          Length = 1081

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 99/116 (85%), Gaps = 1/116 (0%)
 Strand = Plus / Minus

                                                                       
Query: 326 gtcaaggggttgcctcaagaacgactccatttgcttcgccctagtcctgatcga-catgt 384
           |||||| |||||||||||||||| ||||||||| ||||||||  ||||||| ||  || |
Sbjct: 775 gtcaagtggttgcctcaagaacgcctccatttggttcgccctgttcctgattgaggatat 716

                                                                   
Query: 385 caaacaccctctgcccaaattcaatcaccagtcctcccatgatactctggtcaatc 440
           ||| |||| ||||||| ||||||||||| | |||||||||||| || | |||||||
Sbjct: 715 caagcaccttctgcccgaattcaatcactaatcctcccatgatgctgtagtcaatc 660
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>gb|AC159336.13| Mus musculus 10 BAC RP24-430N21 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 180454

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 209    ctcttgtaaaggaaagcttttatttca 235
              ||||||||||||||||| |||||||||
Sbjct: 134324 ctcttgtaaaggaaagcatttatttca 134350
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>gb|AC153852.9| Mus musculus 10 BAC RP23-136F8 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 222518

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 209   ctcttgtaaaggaaagcttttatttca 235
             ||||||||||||||||| |||||||||
Sbjct: 27155 ctcttgtaaaggaaagcatttatttca 27181
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>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 173810

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 63     caaaggaaaattacagacactt 84
              ||||||||||||||||||||||
Sbjct: 129602 caaaggaaaattacagacactt 129581
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>gb|AY217336.1| Papaver somniferum S-adenosyl-L-methionine:coclaurine
           N-methyltransferase mRNA, complete cds
          Length = 1286

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 114 atgtttttatccatgtttttc 134
           |||||||||||||||||||||
Sbjct: 968 atgtttttatccatgtttttc 948
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>ref|XM_686143.1| PREDICTED: Danio rerio similar to Heparin sulfate
            N-deacetylase/N-sulfotransferase (N-HSST) (N-heparin
            sulfate sulfotransferase) (Glucosaminyl
            N-deacetylase/N-sulfotransferase) (LOC562765), mRNA
          Length = 3737

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 77   agacacttgaattaaaaactttcca 101
            ||||||||||||||||| |||||||
Sbjct: 3258 agacacttgaattaaaagctttcca 3234
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>gb|AC154659.2| Mus musculus BAC clone RP24-269K6 from chromosome 17, complete sequence
          Length = 177071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 206   gttctcttgtaaaggaaagct 226
             |||||||||||||||||||||
Sbjct: 62503 gttctcttgtaaaggaaagct 62523
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>emb|BX649358.3| Zebrafish DNA sequence from clone CH211-69P6 in linkage group 13,
            complete sequence
          Length = 181307

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 77   agacacttgaattaaaaactttcca 101
            ||||||||||||||||| |||||||
Sbjct: 8187 agacacttgaattaaaagctttcca 8211
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>emb|BX247881.6| Zebrafish DNA sequence from clone DKEY-10M1 in linkage group 13,
            complete sequence
          Length = 219382

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 77   agacacttgaattaaaaactttcca 101
            ||||||||||||||||| |||||||
Sbjct: 7880 agacacttgaattaaaagctttcca 7904
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>gb|AE000661.1|HUAE000661 Homo sapiens T-cell receptor alpha delta locus from bases 752679 to
             1000555 (section 4 of 5) of the Complete Nucleotide
             Sequence
          Length = 247877

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aatagcacttcaaaggaaaa 72
             ||||||||||||||||||||
Sbjct: 53171 aatagcacttcaaaggaaaa 53152
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>gb|AC124557.4| Mus musculus BAC clone RP23-247H15 from chromosome 19, complete
             sequence
          Length = 178544

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    aggaaaattacagacacttg 85
             ||||||||||||||||||||
Sbjct: 57963 aggaaaattacagacacttg 57944
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>emb|AL158064.16| Human DNA sequence from clone RP11-470M1 on chromosome 13, complete
              sequence
          Length = 160587

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    aaggaaagcttttatttcaa 236
              ||||||||||||||||||||
Sbjct: 144253 aaggaaagcttttatttcaa 144234
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 232     ttcaagaccacatcgaagaa 251
               ||||||||||||||||||||
Sbjct: 1754831 ttcaagaccacatcgaagaa 1754812
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>emb|AL139148.12| Human DNA sequence from clone RP4-630J13 on chromosome 1p12-13.3
             Contains a high density lipoprotein binding protein
             (vigilin) (HDLBP) pseudogene, complete sequence
          Length = 92514

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   tctcctcatgtttttatcca 126
             ||||||||||||||||||||
Sbjct: 53874 tctcctcatgtttttatcca 53855
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>emb|BX004866.22| Mouse DNA sequence from clone RP23-360A7 on chromosome 4 Contains a
              ribosomal protein 7a (Rpl7a) pseudogene, complete sequence
          Length = 161600

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     actttccatgacctctcctc 113
              ||||||||||||||||||||
Sbjct: 104488 actttccatgacctctcctc 104507
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>gb|AC098616.2| Homo sapiens chromosome 3 clone RP11-279I18, complete sequence
          Length = 159629

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     ctgaatacgaggggaaaata 56
              ||||||||||||||||||||
Sbjct: 134617 ctgaatacgaggggaaaata 134636
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>gb|AC092503.2| Homo sapiens chromosome 3 clone RP11-539L2, complete sequence
          Length = 195568

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    ctgaatacgaggggaaaata 56
             ||||||||||||||||||||
Sbjct: 78336 ctgaatacgaggggaaaata 78355
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>ref|XM_688792.1| PREDICTED: Danio rerio similar to bloodthirsty (LOC565512), mRNA
          Length = 2178

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 accacatcgaagaagcagac 257
           ||||||||||||||||||||
Sbjct: 341 accacatcgaagaagcagac 322
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 56      agcacttcaaaggaaaatta 75
               ||||||||||||||||||||
Sbjct: 2393624 agcacttcaaaggaaaatta 2393605
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>gb|AC100738.8| Mus musculus chromosome 15, clone RP24-362K21, complete sequence
          Length = 128950

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 56     agcacttcaaaggaaaattacaga 79
              |||||||||||||||||| |||||
Sbjct: 114012 agcacttcaaaggaaaataacaga 113989
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>gb|AC131943.1| Homo sapiens BAC clone CTD-2242C10 from 4, complete sequence
          Length = 135585

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   cgaagaagcagacatgaggg 264
             ||||||||||||||||||||
Sbjct: 93455 cgaagaagcagacatgaggg 93436
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>gb|AC007744.2| Homo sapiens BAC clone RP11-482H16 from 2, complete sequence
          Length = 199218

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    atgtttttatccatgttttt 133
              ||||||||||||||||||||
Sbjct: 194816 atgtttttatccatgttttt 194797
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>gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188972

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    gtaaaggaaagcttttattt 233
              ||||||||||||||||||||
Sbjct: 143151 gtaaaggaaagcttttattt 143132
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>emb|AL929191.9| Mouse DNA sequence from clone RP23-330G15 on chromosome 2, complete
              sequence
          Length = 192196

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 209    ctcttgtaaaggaaagcttttatt 232
              ||||||||||||||||| ||||||
Sbjct: 165500 ctcttgtaaaggaaagcatttatt 165523
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 56      agcacttcaaaggaaaatta 75
               ||||||||||||||||||||
Sbjct: 2393568 agcacttcaaaggaaaatta 2393549
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>emb|AL928919.12| Mouse DNA sequence from clone RP24-239N23 on chromosome 4, complete
             sequence
          Length = 141866

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    agcacttcaaaggaaaattacaga 79
             |||||||||||||||||| |||||
Sbjct: 73027 agcacttcaaaggaaaataacaga 73004
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>emb|AL954364.5|CNS08CCZ Oryza sativa chromosome 12, . BAC OSJNBa0023M16 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 156258

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     agcacttcaaaggaaaatta 75
              ||||||||||||||||||||
Sbjct: 118815 agcacttcaaaggaaaatta 118796
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>gb|AC133940.4| Mus musculus BAC clone RP23-433D1 from 16, complete sequence
          Length = 172079

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 70     aaattacagacacttgaattaaaa 93
              ||||||||||||||||| ||||||
Sbjct: 103111 aaattacagacacttgacttaaaa 103088
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>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     aatagcacttcaaaggaaaa 72
              ||||||||||||||||||||
Sbjct: 805849 aatagcacttcaaaggaaaa 805830
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>dbj|AP000864.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-674N23, complete
             sequence
          Length = 171200

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 125   catgtttttcggtagaaatgaaat 148
             |||||||||||| |||||||||||
Sbjct: 54816 catgtttttcggaagaaatgaaat 54839


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,732,809
Number of Sequences: 3902068
Number of extensions: 5732809
Number of successful extensions: 128382
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128178
Number of HSP's gapped (non-prelim): 198
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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