ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl24a04 |
|---|---|
| Clone Library Name | barley_pub |
>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore| protein NUP145) [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)] Length = 1317 Score = 37.4 bits (85), Expect = 0.016 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Frame = -1 Query: 435 TLLNIKCMNRKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFISFDGAKGEWKFRVKHFSSY 256 TL N+ +++KT + +F +F+ K + + +IS++ G W F+V HFS + Sbjct: 549 TLENVYPVDKKTKKPMKDTTKFAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVNHFSIW 608 Query: 255 GF-GEAEADHLADSL 214 G E +A+ D L Sbjct: 609 GLVNEEDAEIDEDDL 623
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 34.3 bits (77), Expect = 0.13 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -1 Query: 339 AEEQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 232 + +QG +F + G W F+V HFS YG +++ + Sbjct: 856 SRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 891
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 34.3 bits (77), Expect = 0.13 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -1 Query: 339 AEEQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 232 + +QG +F + G W F+V HFS YG +++ + Sbjct: 855 SRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 890
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 32.0 bits (71), Expect = 0.67 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Frame = -1 Query: 414 MNRKTDEQYT--QGPRFDKFKEMLVKKAEEQGVEFISFDGAKGEWKFRVKHFSSYGFGEA 241 ++R+T E Q PR+ + + L + + EFI F+ G+W F+V+HFS YG + Sbjct: 888 LSRETREPIKDPQNPRYIQHVKRLHRIKD---TEFIDFND--GKWIFKVQHFSRYGLLDD 942 Query: 240 EAD 232 E + Sbjct: 943 EEE 945
>Y368_LISMO (Q8Y9Z9) Putative Nudix hydrolase lmo0368 (EC 3.6.-.-)| Length = 169 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 72 EFLPMFFCTYLFSLKNAQKLH 10 EF+P FF LF+LKNA +H Sbjct: 148 EFIPYFFLNQLFNLKNATTIH 168
>Y387_LISIN (Q92ES1) Putative Nudix hydrolase lin0387 (EC 3.6.-.-)| Length = 169 Score = 30.0 bits (66), Expect = 2.5 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 Query: 72 EFLPMFFCTYLFSLKNAQKLH 10 EF+P FF LF LKNA +H Sbjct: 148 EFIPYFFLNQLFELKNATTIH 168
>UBP14_YEAST (P38237) Ubiquitin carboxyl-terminal hydrolase 14 (EC 3.1.2.15)| (Ubiquitin thioesterase 14) (Ubiquitin-specific-processing protease 14) (Deubiquitinating enzyme 14) (Glucose-induced degradation protein 6) Length = 803 Score = 30.0 bits (66), Expect = 2.5 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +2 Query: 275 TLNFHSPLAPSNEINSTPCSSAFFTSISLNLSNLGPCVYCSSV 403 T NF P P N +N CSS T NL C++C ++ Sbjct: 196 TENFQIPSKPENTVNLNQCSSCDLT------QNLWLCLHCGNI 232
>UXAC_CLOPE (Q8XP14) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)| (Uronic isomerase) Length = 466 Score = 30.0 bits (66), Expect = 2.5 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = -1 Query: 429 LNIKC-MNRKTDEQYTQGPRFDKFKEMLVKKAEEQGVEFISFDGAKGEWKFRVKHFSSYG 253 +N KC +N + + + FKE + K AE VE SFD K + R+ +F Y Sbjct: 173 INFKCSVNPSFRPEKAMKIQNEGFKEYIGKLAEVSNVEIKSFDDLKKALEIRLDYF--YE 230 Query: 252 FGEAEADHLADSL*LYR 202 G DH + + Y+ Sbjct: 231 NGCMITDHSLERVVFYK 247
>VGLG_BRSV4 (O10684) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 30.0 bits (66), Expect = 2.5 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +3 Query: 60 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 227 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>VGLG_BRSV1 (O10683) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 30.0 bits (66), Expect = 2.5 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +3 Query: 60 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 227 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)| (Dnmt3b) (DNA methyltransferase HsaIIIB) (DNA MTase HsaIIIB) (M.HsaIIIB) Length = 853 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/60 (25%), Positives = 30/60 (50%) Frame = +3 Query: 45 MYRKTWEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQ 224 ++R+T + S RT+ + + S+ R S ++T R NH E+ + P ++ R + Sbjct: 90 LFRETRTRSESPAVRTRNNNSVSSRERHRPSPRSTRGRQGRNHVDESPVEFPATRSLRRR 149
>CXI8_CONRA (Q7Z091) I-superfamily conotoxin R11.8 (r11d)| Length = 41 Score = 28.5 bits (62), Expect = 7.4 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 218 PCSFIDRCCNCCL 180 PCS+ CCNCCL Sbjct: 8 PCSYHADCCNCCL 20
>CXI17_CONRA (Q7Z093) I-superfamily conotoxin R11.17| Length = 46 Score = 28.5 bits (62), Expect = 7.4 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 218 PCSFIDRCCNCCL 180 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>CXI14_CONRA (Q7Z092) I-superfamily conotoxin R11.14 (r11b)| Length = 46 Score = 28.5 bits (62), Expect = 7.4 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 218 PCSFIDRCCNCCL 180 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>PARM1_RAT (Q6P9X9) Protein PARM-1 precursor (Prostatic androgen-repressed| message 1 protein) (Castration-induced prostatic apoptosis-related protein 1) (CIPAR-1) Length = 296 Score = 28.1 bits (61), Expect = 9.7 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +3 Query: 57 TWEGTHSSIQRTKASQPIFSQTRSAT---STKAT*NRVFTNHPKEAAITTP 200 TW T S+ A+ P+ S T +A+ +T A+ HP+E A+T+P Sbjct: 41 TW--TTSAQHTAMATTPVASATHNASVLRTTAASLTSQLPTHPREEAVTSP 89 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,995,685 Number of Sequences: 219361 Number of extensions: 1177872 Number of successful extensions: 3590 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3487 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3584 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
