Clone Name | rbastl24a04 |
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Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 147 bits (74), Expect = 3e-32 Identities = 155/182 (85%) Strand = Plus / Minus Query: 242 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 301 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 3343074 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 3343015 Query: 302 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 361 |||| || ||||| ||||| | ||||| |||||||||||||||||||| ||||||||| Sbjct: 3343014 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 3342955 Query: 362 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 421 ||||| | | ||||||||| | ||||||||||| |||||||| | |||||||||||| Sbjct: 3342954 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 3342895 Query: 422 at 423 || Sbjct: 3342894 at 3342893 Score = 139 bits (70), Expect = 8e-30 Identities = 154/182 (84%) Strand = Plus / Minus Query: 242 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 301 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| || Sbjct: 3351809 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 3351750 Query: 302 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 361 |||| || ||||| ||||| | ||||| |||||||| ||||||||||||||||||||| Sbjct: 3351749 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 3351690 Query: 362 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 421 ||||||| | ||||||||| | |||||||| || |||||||| | |||||||||||| Sbjct: 3351689 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 3351630 Query: 422 at 423 || Sbjct: 3351629 at 3351628
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 147 bits (74), Expect = 3e-32 Identities = 155/182 (85%) Strand = Plus / Minus Query: 242 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 301 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 3343019 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 3342960 Query: 302 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 361 |||| || ||||| ||||| | ||||| |||||||||||||||||||| ||||||||| Sbjct: 3342959 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 3342900 Query: 362 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 421 ||||| | | ||||||||| | ||||||||||| |||||||| | |||||||||||| Sbjct: 3342899 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 3342840 Query: 422 at 423 || Sbjct: 3342839 at 3342838 Score = 139 bits (70), Expect = 8e-30 Identities = 154/182 (84%) Strand = Plus / Minus Query: 242 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 301 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| || Sbjct: 3351754 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 3351695 Query: 302 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 361 |||| || ||||| ||||| | ||||| |||||||| ||||||||||||||||||||| Sbjct: 3351694 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 3351635 Query: 362 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 421 ||||||| | ||||||||| | |||||||| || |||||||| | |||||||||||| Sbjct: 3351634 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 3351575 Query: 422 at 423 || Sbjct: 3351574 at 3351573
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137936 Score = 147 bits (74), Expect = 3e-32 Identities = 155/182 (85%) Strand = Plus / Minus Query: 242 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 301 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||||||||| Sbjct: 22127 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgcccttggca 22068 Query: 302 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 361 |||| || ||||| ||||| | ||||| |||||||||||||||||||| ||||||||| Sbjct: 22067 gcatcgaatgagatgaactcagcaccctgctcctcagccttcttcaccagtatctccttg 22008 Query: 362 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 421 ||||| | | ||||||||| | ||||||||||| |||||||| | |||||||||||| Sbjct: 22007 tacttgcccaccctcggaccctctgtgtactgctcccccgtcttcttgttcatgcacttg 21948 Query: 422 at 423 || Sbjct: 21947 at 21946 Score = 139 bits (70), Expect = 8e-30 Identities = 154/182 (84%) Strand = Plus / Minus Query: 242 gcttcaccaaacccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcg 301 ||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| || Sbjct: 30862 gcttcaccaaagccataggagctgaaatgcttgaccctgaatttccactcgccattgacg 30803 Query: 302 ccatcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctccttg 361 |||| || ||||| ||||| | ||||| |||||||| ||||||||||||||||||||| Sbjct: 30802 gcatcgaaagagatgaactcagcaccctgctcctcagctttcttcaccagcatctccttg 30743 Query: 362 aacttgtcaaacctcggaccttgcgtgtactgctcgtccgtcttcctattcatgcacttg 421 ||||||| | ||||||||| | |||||||| || |||||||| | |||||||||||| Sbjct: 30742 tacttgtccaccctcggaccctctgtgtactgatcccccgtcttcttgttcatgcacttg 30683 Query: 422 at 423 || Sbjct: 30682 at 30681
>gb|BT018481.1| Zea mays clone EL01N0424C07.d mRNA sequence Length = 1900 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Minus Query: 257 taggagctgaagtgcttcactctgaacttccactcgcccttggcgccatcaaacgagata 316 |||| |||||| |||||||| |||||||||||||| |||||||| ||||||| || | | Sbjct: 1730 taggcgctgaaatgcttcaccctgaacttccactctcccttggcagcatcaaaggacaca 1671 Query: 317 aactccactccctgttcctcagccttcttcaccagcatctcc 358 |||||| | ||||| ||||| |||||||||| |||||||||| Sbjct: 1670 aactccgcgccctgctcctccgccttcttcatcagcatctcc 1629
>gb|BT018715.1| Zea mays clone EL01N0517E03.d mRNA sequence Length = 1871 Score = 87.7 bits (44), Expect = 3e-14 Identities = 99/116 (85%), Gaps = 1/116 (0%) Strand = Plus / Minus Query: 244 ttcaccaaa-cccgtaggagctgaagtgcttcactctgaacttccactcgcccttggcgc 302 ||||||||| |||||||| ||||||||||||||| |||||||||||||| |||||| | Sbjct: 1579 ttcaccaaagcccgtaggcgctgaagtgcttcaccctgaacttccactctcccttgacag 1520 Query: 303 catcaaacgagataaactccactccctgttcctcagccttcttcaccagcatctcc 358 | || || || | |||||| | ||||| ||||| ||||||||||||||||||||| Sbjct: 1519 cgtcgaaggacacaaactctgcgccctgctcctccgccttcttcaccagcatctcc 1464
>gb|AY110896.1| Zea mays CL23032_-2 mRNA sequence Length = 625 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Plus Query: 257 taggagctgaagtgcttcactctgaacttccactcgcccttggcgccatcaaa 309 |||| ||||||||||||||| |||||||||||||| |||||||| ||||||| Sbjct: 184 taggcgctgaagtgcttcaccctgaacttccactctcccttggcagcatcaaa 236
>gb|AY389582.1| Hyacinthus orientalis nucleoporin mRNA, partial cds Length = 732 Score = 54.0 bits (27), Expect = 4e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 261 agctgaagtgcttcactctgaacttccactc 291 |||||||||||||||| |||||||||||||| Sbjct: 418 agctgaagtgcttcaccctgaacttccactc 388
>gb|AC095044.3| Homo sapiens BAC clone RP11-132B16 from 7, complete sequence Length = 134184 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 cctgttcctcagccttcttcac 348 |||||||||||||||||||||| Sbjct: 5906 cctgttcctcagccttcttcac 5885
>gb|AC142295.1| Pan troglodytes BAC clone RP43-80F20 from 7, complete sequence Length = 165071 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 cctgttcctcagccttcttcac 348 |||||||||||||||||||||| Sbjct: 140564 cctgttcctcagccttcttcac 140543
>ref|XM_639988.1| Dictyostelium discoideum hypothetical protein (DDB0168011), partial mRNA Length = 4611 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 169 atcatccaaaagaggcagcaattacaaca 197 ||||||||||||| |||| |||||||||| Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522
>ref|XM_639242.1| Dictyostelium discoideum hypothetical protein (DDB0217388), partial mRNA Length = 4611 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 169 atcatccaaaagaggcagcaattacaaca 197 ||||||||||||| |||| |||||||||| Sbjct: 494 atcatccaaaagatgcagaaattacaaca 522
>gb|AC096588.1| Homo sapiens BAC clone RP11-725D20 from 4, complete sequence Length = 150864 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 49 acagaaaaacatgggaaggaactca 73 ||||||||||||| ||||||||||| Sbjct: 93457 acagaaaaacatgagaaggaactca 93481
>emb|BX682233.6| Zebrafish DNA sequence from clone CH211-177P5 in linkage group 16, complete sequence Length = 145536 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 agaacaaaagcatcacaaccaatat 111 ||||||||||||||||||| ||||| Sbjct: 40528 agaacaaaagcatcacaactaatat 40552
>gb|AC155231.2| Mus musculus BAC clone RP24-336I23 from chromosome 12, complete sequence Length = 175296 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 258 aggagctgaagtgcttcactctgaa 282 |||||||| |||||||||||||||| Sbjct: 135270 aggagctgtagtgcttcactctgaa 135294
>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence Length = 541399 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 169 atcatccaaaagaggcagcaattacaaca 197 ||||||||||||| |||| |||||||||| Sbjct: 178831 atcatccaaaagatgcagaaattacaaca 178803
>emb|AL844887.10| Zebrafish DNA sequence from clone DKEY-66C10, complete sequence Length = 243870 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 agaacaaaagcatcacaaccaatat 111 ||||||||||||||||||| ||||| Sbjct: 17970 agaacaaaagcatcacaactaatat 17994
>emb|CT009613.14| Mouse DNA sequence from clone RP23-55L9 on chromosome 12, complete sequence Length = 214861 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 258 aggagctgaagtgcttcactctgaa 282 |||||||| |||||||||||||||| Sbjct: 206265 aggagctgtagtgcttcactctgaa 206241
>emb|AL954832.12| Zebrafish DNA sequence from clone DKEY-15O4, complete sequence Length = 256126 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 agaacaaaagcatcacaaccaatat 111 ||||||||||||||||||| ||||| Sbjct: 208905 agaacaaaagcatcacaactaatat 208929
>gb|AC101722.14| Mus musculus chromosome 5, clone RP23-310L24, complete sequence Length = 172370 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 ctgttcctcagccttcttca 347 |||||||||||||||||||| Sbjct: 121775 ctgttcctcagccttcttca 121794
>gb|AC150424.3| Branchiostoma floridae clone CH302-7J16, complete sequence Length = 154657 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaaagatatgtacagaaaa 56 |||||||||||||||||||| Sbjct: 28955 aaaaagatatgtacagaaaa 28936
>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete sequence Length = 217187 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 tgtacagaaaaacatgggaaggaa 69 ||||||||| |||||||||||||| Sbjct: 120123 tgtacagaagaacatgggaaggaa 120100
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 tactgctcgtccgtcttcct 408 |||||||||||||||||||| Sbjct: 466077 tactgctcgtccgtcttcct 466058
>gb|BC073354.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA clone MGC:80771 IMAGE:5512777), complete cds Length = 3361 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 gaactcatagcagcattcagagaa 90 ||||| |||||||||||||||||| Sbjct: 1829 gaactaatagcagcattcagagaa 1852
>gb|BC041292.1| Xenopus laevis similar to Hermansky-Pudlak syndrome 3, mRNA (cDNA clone IMAGE:4682613), partial cds Length = 1593 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 gaactcatagcagcattcagagaa 90 ||||| |||||||||||||||||| Sbjct: 67 gaactaatagcagcattcagagaa 90
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 tctccttgaacttgtcaaac 373 |||||||||||||||||||| Sbjct: 509945 tctccttgaacttgtcaaac 509926
>gb|AC110034.8| Mus musculus chromosome 3, clone RP23-237L12, complete sequence Length = 188908 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 318 actccactccctgttcctcagccttcttcacc 349 |||||| | |||| |||||||||||||||||| Sbjct: 134888 actccagtacctgctcctcagccttcttcacc 134857
>gb|AC146683.11| Medicago truncatula clone mth2-179n10, complete sequence Length = 131133 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 33 atgaaaaaagatatgtacagaaaa 56 ||||||||||||||||| |||||| Sbjct: 74940 atgaaaaaagatatgtatagaaaa 74917
>gb|AC161535.5| Mus musculus chromosome 5, clone RP23-26J13, complete sequence Length = 209259 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 ctgttcctcagccttcttca 347 |||||||||||||||||||| Sbjct: 202087 ctgttcctcagccttcttca 202068
>emb|AL590542.4| Human DNA sequence from clone RP11-135F12 on chromosome 6, complete sequence Length = 43345 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 gcatctccttgaacttgtca 370 |||||||||||||||||||| Sbjct: 1794 gcatctccttgaacttgtca 1775
>gb|AC156552.10| Mus musculus chromosome 3, clone RP24-271K21, complete sequence Length = 168716 Score = 40.1 bits (20), Expect = 5.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 318 actccactccctgttcctcagccttcttcacc 349 |||||| | |||| |||||||||||||||||| Sbjct: 168205 actccagtacctgctcctcagccttcttcacc 168236
>dbj|AB193034.1| Corynebacterium glutamicum DNA, strain specific island 7, strain: R Length = 16484 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 408 tattcatgcacttgatgttcagga 431 ||||||||||||||||||| |||| Sbjct: 14317 tattcatgcacttgatgttgagga 14340
>gb|AY190950.1| Drosophila willistoni clone DWIF01_1_E5 (D1417) genomic sequence Length = 40487 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 cagcattcagagaacaaaag 96 |||||||||||||||||||| Sbjct: 11828 cagcattcagagaacaaaag 11809
>gb|AC002359.1|AC002359 Homo sapiens Xp22 Cosmid U239B3 (from Lawrence Livermore X library) complete sequence Length = 16699 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tcagccaggtggtcggcttc 240 |||||||||||||||||||| Sbjct: 8656 tcagccaggtggtcggcttc 8675
>dbj|AP002980.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1058D3 Length = 166683 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 attcatgcacttgatgttca 428 |||||||||||||||||||| Sbjct: 104715 attcatgcacttgatgttca 104734
>gb|L28808.1|RABMSD Oryctolagus cuniculus manganese superoxide dismutase mRNA, partial cds Length = 606 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 349 cagcatctccttgaacttgtcaaa 372 |||| ||||||||||||||||||| Sbjct: 348 cagcctctccttgaacttgtcaaa 325 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,111,739 Number of Sequences: 3902068 Number of extensions: 4111739 Number of successful extensions: 87701 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87553 Number of HSP's gapped (non-prelim): 148 length of query: 435 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 413 effective length of database: 17,147,199,772 effective search space: 7081793505836 effective search space used: 7081793505836 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)