ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl24a02 |
|---|---|
| Clone Library Name | barley_pub |
>SOPB_SALDZ (Q9AH19) Inositol phosphate phosphatase sopB (EC 3.1.3.-) (Effector| protein sopB) (Fragment) Length = 416 Score = 29.6 bits (65), Expect = 2.0 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Frame = +3 Query: 174 GRRSACLSLGLGLATAAVFHTTPARATADGDEEPEPANNGW---WLTEFP 314 G L LG GL T+ ++ D PE GW WL ++P Sbjct: 215 GVNELALKLGFGLKTSDSYNVEALHQLLGNDLRPEAKPGGWVGDWLAQYP 264
>FXL19_MOUSE (Q6PB97) F-box/LRR-repeat protein 19 (F-box and leucine-rich repeat| protein 19) Length = 674 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/29 (48%), Positives = 14/29 (48%) Frame = +3 Query: 240 PARATADGDEEPEPANNGWWLTEFPLPVP 326 P R AD EE GW LTE P P P Sbjct: 142 PGRRRADNGEEGANLGGGWKLTEEPPPPP 170
>CIT1_ECOLI (P07661) Citrate-proton symporter (Citrate transporter) (Citrate| carrier protein) (Citrate utilization determinant) (Citrate utilization protein A) Length = 431 Score = 28.9 bits (63), Expect = 3.4 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +3 Query: 180 RSACLSLGLGLATAAVFHTTPARATADGDEEPEPANNGWWL 302 R+ SL LATA TPA +TA + ++ GWWL Sbjct: 362 RTVGFSLAFSLATAIFGGLTPAISTALVQLTGDKSSPGWWL 402
>CIT1_SALTY (P0A2G3) Citrate-proton symporter (Citrate transporter) (Citrate| carrier protein) (Citrate utilization determinant) (Citrate utilization protein A) Length = 434 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +3 Query: 180 RSACLSLGLGLATAAVFHTTPARATADGDEEPEPANNGWWL 302 R+ SL LATA TPA +TA + ++ GWWL Sbjct: 365 RTVGFSLAFSLATAIFGGLTPAISTALVKLTGDKSSPGWWL 405
>CIT1_SALTI (P0A2G4) Citrate-proton symporter (Citrate transporter) (Citrate| carrier protein) (Citrate utilization determinant) (Citrate utilization protein A) Length = 434 Score = 28.5 bits (62), Expect = 4.4 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +3 Query: 180 RSACLSLGLGLATAAVFHTTPARATADGDEEPEPANNGWWL 302 R+ SL LATA TPA +TA + ++ GWWL Sbjct: 365 RTVGFSLAFSLATAIFGGLTPAISTALVKLTGDKSSPGWWL 405
>FXL19_HUMAN (Q6PCT2) F-box/LRR-repeat protein 19 (F-box and leucine-rich repeat| protein 19) Length = 674 Score = 28.1 bits (61), Expect = 5.7 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +3 Query: 240 PARATADGDEEPEPANNGWWLTEF-PLPVP 326 P R AD EE +GW LTE PLP P Sbjct: 142 PGRRRADNGEEGASLGSGWKLTEEPPLPPP 171
>SOPB_SALTY (O30916) Inositol phosphate phosphatase sopB (EC 3.1.3.-) (Effector| protein sopB) Length = 561 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 3/50 (6%) Frame = +3 Query: 174 GRRSACLSLGLGLATAAVFHTTPARATADGDEEPEPANNGW---WLTEFP 314 G L LG GL + ++ D PE GW WL ++P Sbjct: 360 GVNELALKLGFGLKASDSYNAEALHQLLGNDLRPEARPGGWVGEWLAQYP 409
>SOPB_SALTI (Q8Z7R1) Inositol phosphate phosphatase sopB (EC 3.1.3.-) (Effector| protein sopB) Length = 561 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 3/50 (6%) Frame = +3 Query: 174 GRRSACLSLGLGLATAAVFHTTPARATADGDEEPEPANNGW---WLTEFP 314 G L LG GL + ++ D PE GW WL ++P Sbjct: 360 GVNELALKLGFGLKASDSYNAEALHQLLGNDLRPEARPGGWVGEWLAQYP 409
>SOPB_SALBL (Q9RER2) Inositol phosphate phosphatase sopB (EC 3.1.3.-) (Effector| protein sopB) (Fragment) Length = 433 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 3/50 (6%) Frame = +3 Query: 174 GRRSACLSLGLGLATAAVFHTTPARATADGDEEPEPANNGW---WLTEFP 314 G L LG GL + ++ D PE GW WL ++P Sbjct: 264 GVNELALKLGFGLKASDSYNAEALHQLLGNDLRPEARPGGWVGEWLAQYP 313
>ENV_MLVHO (P21436) Env polyprotein precursor [Contains: Coat protein GP76;| Spike protein p15E] Length = 666 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +1 Query: 229 STRHPPAPPLTATRSRSRPITAGGSPSSPCRCPR 330 S + PP+ P A S +T GG+PS+P P+ Sbjct: 272 SEQRPPSQPEPARLPPSSNLTQGGTPSAPTGPPQ 305
>NGN2_HUMAN (Q9H2A3) Neurogenin 2| Length = 272 Score = 27.7 bits (60), Expect = 7.5 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 204 LGLATAAVFHTTPARATADGDEEPEPANNG 293 LG A+ A+ TP ++AD +EE EP +G Sbjct: 20 LGSASPALAALTPLSSSADEEEEEEPGASG 49
>IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS)| Length = 1321 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 241 PPAPPLTATRSRSRPITAGGSPSS 312 PPAPPL A+ + S + + SP+S Sbjct: 925 PPAPPLLASAASSSSLLSASSPAS 948
>IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)| Length = 1338 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 241 PPAPPLTATRSRSRPITAGGSPSS 312 PPAPPL A+ + S + + SP+S Sbjct: 933 PPAPPLLASAASSSSLLSASSPAS 956
>PKNA_MYCLE (P54743) Probable serine/threonine-protein kinase pknA (EC| 2.7.11.1) Length = 437 Score = 27.3 bits (59), Expect = 9.8 Identities = 18/50 (36%), Positives = 20/50 (40%) Frame = +1 Query: 157 TPSSHRAGDQXXXXXXXXXXXXXCSTRHPPAPPLTATRSRSRPITAGGSP 306 TPSS RA C T+ PAP RSRP T+G P Sbjct: 286 TPSSGRASPTTIPSSTQARAAVACGTK-TPAP------RRSRPSTSGNRP 328
>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21| Length = 348 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +1 Query: 229 STRHPPAPPLTATRSRSRPITAGGSPSSPCR 321 ST+ PP PP + + S+ T+ SPSSP R Sbjct: 188 STQPPPHPPARCSSTHSQS-TSSSSPSSPPR 217 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,999,261 Number of Sequences: 219361 Number of extensions: 612098 Number of successful extensions: 2061 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1936 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2059 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
