ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl23h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EUTP_SALTY (P0A208) Ethanolamine utilization protein eutP 29 2.9
2EUTP_SALTI (P0A209) Ethanolamine utilization protein eutP 29 2.9
3GID_BACSK (Q5WFP8) tRNA uridine 5-carboxymethylaminomethyl modif... 28 5.0
4GID_STAES (Q8CPH2) tRNA uridine 5-carboxymethylaminomethyl modif... 28 6.6
5GID_STAEQ (Q5HPU1) tRNA uridine 5-carboxymethylaminomethyl modif... 28 6.6

>EUTP_SALTY (P0A208) Ethanolamine utilization protein eutP|
          Length = 159

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 156 EFERHG-ID*PGRYFIHTRW 100
           EF  HG ID PG YF H RW
Sbjct: 35  EFNDHGDIDTPGEYFSHPRW 54



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>EUTP_SALTI (P0A209) Ethanolamine utilization protein eutP|
          Length = 159

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 156 EFERHG-ID*PGRYFIHTRW 100
           EF  HG ID PG YF H RW
Sbjct: 35  EFNDHGDIDTPGEYFSHPRW 54



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>GID_BACSK (Q5WFP8) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 436

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = -2

Query: 176 SRLTCGRNLKGTALINPVDILYTRAGHFDGAFLHCKTSVTACTYGDVILDVND 18
           + L C  +L+G +L N V +L     H D   +           G + +D +D
Sbjct: 50  AELVCSNSLRGNSLANAVGVLKEEMRHLDSVIIKAADEAAVPAGGALAVDRHD 102



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>GID_STAES (Q8CPH2) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 435

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 176 SRLTCGRNLKGTALINPVDILYTRAGHFDGAFLHCKTSVTACTYGDVILDVND 18
           + L C  +L+G AL N V +L     H D   +           G + +D +D
Sbjct: 48  AELVCSNSLRGNALTNAVGVLKEEMRHLDSLIITSADKARVPAGGALAVDRHD 100



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>GID_STAEQ (Q5HPU1) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 435

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = -2

Query: 176 SRLTCGRNLKGTALINPVDILYTRAGHFDGAFLHCKTSVTACTYGDVILDVND 18
           + L C  +L+G AL N V +L     H D   +           G + +D +D
Sbjct: 48  AELVCSNSLRGNALTNAVGVLKEEMRHLDSLIITSADKARVPAGGALAVDRHD 100


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,776,446
Number of Sequences: 219361
Number of extensions: 484231
Number of successful extensions: 1326
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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