ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl23g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC108924.5| Homo sapiens chromosome 8, clone RP11-1113C19, co... 42 0.39
2gb|AC116154.2| Homo sapiens chromosome 8, clone RP11-927P11, com... 42 0.39
3dbj|AP006647.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 0.39
4dbj|AP006352.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 0.39
5dbj|AP006138.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 0.39
6dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 0.39
7dbj|AP004287.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 0.39
8gb|AY591682.1| Mus musculus clone IgK8-27 immunoglobulin kappa-l... 40 1.5
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.5
10gb|AC159715.5| Mus musculus 6 BAC RP23-367A13 (Roswell Park Canc... 40 1.5
11emb|AL157933.19| Human DNA sequence from clone RP11-395L12 on ch... 40 1.5
12gb|AC155332.10| Mus musculus 6 BAC RP24-140J8 (Roswell Park Canc... 40 1.5
13emb|BX323543.11| Zebrafish DNA sequence from clone DKEYP-67E1 in... 40 1.5
14gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.5
15gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, compl... 40 1.5
16gb|AC091903.2| Homo sapiens chromosome 5 clone RP11-182I21, comp... 40 1.5
17gb|AC158672.6| Mus musculus 6 BAC RP23-64J23 (Roswell Park Cance... 40 1.5
18emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in l... 40 1.5
19dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.5
20emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-5... 40 1.5
21ref|XM_638872.1| Dictyostelium discoideum hypothetical protein (... 38 6.0
22gb|AC153148.4| Mus musculus BAC clone RP23-189N11 from chromosom... 38 6.0
23gb|AC115629.3| Mus musculus BAC clone RP23-74J16 from chromosome... 38 6.0
24emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2-17h8... 38 6.0
25emb|Z47357.1|CEZK1128 Caenorhabditis elegans Cosmid ZK1128, comp... 38 6.0
26gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, comple... 38 6.0
27gb|AC119236.8| Mus musculus chromosome 19, clone RP24-213B12, co... 38 6.0
28gb|AC159807.2| Mus musculus BAC clone RP24-399D3 from chromosome... 38 6.0
29gb|AC144375.14| Medicago truncatula clone mth2-11p13, complete s... 38 6.0
30emb|AL391260.13| Human DNA sequence from clone RP11-328B14 on ch... 38 6.0
31emb|AL157819.15| Human DNA sequence from clone RP11-480G1 on chr... 38 6.0
32gb|AC106128.6| Rattus norvegicus 1 BAC CH230-149H17 (Children's ... 38 6.0
33emb|BX927069.11| Zebrafish DNA sequence from clone DKEY-24C22 in... 38 6.0
34gb|AC136286.30| Medicago truncatula clone mth2-6c9, complete seq... 38 6.0
35dbj|AB219239.1| Ciona intestinalis mRNA for GnRH-like hexadecape... 38 6.0
36ref|NM_001039882.1| Ciona intestinalis GnRH-like hexadecapeptide... 38 6.0
37gb|AY081217.1| Daucus carota leucine-rich receptor-like protein ... 38 6.0
38gb|AC096763.2| Homo sapiens BAC clone RP11-625A6 from 4, complet... 38 6.0
39gb|BC045945.1| Danio rerio smu-1 suppressor of mec-8 and unc-52 ... 38 6.0
40ref|NM_200199.1| Danio rerio smu-1 suppressor of mec-8 and unc-5... 38 6.0
41gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041... 38 6.0
42ref|XM_342883.2| PREDICTED: Rattus norvegicus similar to RIKEN c... 38 6.0
43emb|BX530067.4| Zebrafish DNA sequence from clone DKEY-194C21 in... 38 6.0
44emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 i... 38 6.0
45emb|AL954221.1| Pan troglodytes chromosome 22 clone RP43-105F23 ... 38 6.0
46gb|AC151978.3| Mus musculus BAC clone RP24-545C19 from 19, compl... 38 6.0
47emb|BX537358.5| Zebrafish DNA sequence from clone DKEY-98L9 in l... 38 6.0
48gb|AC007786.1|AC007786 Homo sapiens chromosome 19, BAC 41855 (CI... 38 6.0
49dbj|AB086394.1| Xenopus laevis cer gene for cerberus, complete cds 38 6.0
50gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 38 6.0
51emb|AL732497.15| Mouse DNA sequence from clone RP23-130H14 on ch... 38 6.0
52emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 i... 38 6.0
53emb|AL603804.18| Mouse DNA sequence from clone RP23-470C16 on ch... 38 6.0
54emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chr... 38 6.0 
>gb|AC108924.5| Homo sapiens chromosome 8, clone RP11-1113C19, complete sequence
          Length = 125488

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    aattttaagtggaaaggaaaa 41
             |||||||||||||||||||||
Sbjct: 94417 aattttaagtggaaaggaaaa 94437



 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    ttttaagtggaaaggaaaa 41
             |||||||||||||||||||
Sbjct: 94396 ttttaagtggaaaggaaaa 94414
to top
>gb|AC116154.2| Homo sapiens chromosome 8, clone RP11-927P11, complete sequence
          Length = 196518

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 21   aattttaagtggaaaggaaaa 41
            |||||||||||||||||||||
Sbjct: 3937 aattttaagtggaaaggaaaa 3957



 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 23   ttttaagtggaaaggaaaa 41
            |||||||||||||||||||
Sbjct: 3916 ttttaagtggaaaggaaaa 3934
to top
>dbj|AP006647.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT29F18, TM0312,
             complete sequence
          Length = 119276

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    agtggaaaggaaaagcacttc 48
             |||||||||||||||||||||
Sbjct: 16799 agtggaaaggaaaagcacttc 16819
to top
>dbj|AP006352.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT40O04, TM0348,
            complete sequence
          Length = 105070

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 28   agtggaaaggaaaagcacttc 48
            |||||||||||||||||||||
Sbjct: 9667 agtggaaaggaaaagcacttc 9647
to top
>dbj|AP006138.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT37A17, TM0240,
              complete sequence
          Length = 121317

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     agtggaaaggaaaagcacttc 48
              |||||||||||||||||||||
Sbjct: 113236 agtggaaaggaaaagcacttc 113216
to top
>dbj|AP006101.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT09A07, TM0181,
              complete sequence
          Length = 185320

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 28     agtggaaaggaaaagcacttc 48
              |||||||||||||||||||||
Sbjct: 131513 agtggaaaggaaaagcacttc 131493
to top
>dbj|AP004287.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1471H7
          Length = 172543

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    aattttaagtggaaaggaaaa 41
             |||||||||||||||||||||
Sbjct: 99047 aattttaagtggaaaggaaaa 99067



 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    ttttaagtggaaaggaaaa 41
             |||||||||||||||||||
Sbjct: 99026 ttttaagtggaaaggaaaa 99044
to top
>gb|AY591682.1| Mus musculus clone IgK8-27 immunoglobulin kappa-like gene, partial
            sequence
          Length = 2901

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  aatgacaagaaaaaacaatt 123
            ||||||||||||||||||||
Sbjct: 2792 aatgacaagaaaaaacaatt 2773
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 22      attttaagtggaaaggaaaa 41
               ||||||||||||||||||||
Sbjct: 7037567 attttaagtggaaaggaaaa 7037586
to top
>gb|AC159715.5| Mus musculus 6 BAC RP23-367A13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209869

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    aatgacaagaaaaaacaatt 123
              ||||||||||||||||||||
Sbjct: 190288 aatgacaagaaaaaacaatt 190307
to top
>emb|AL157933.19| Human DNA sequence from clone RP11-395L12 on chromosome Xq21.1-21.33,
             complete sequence
          Length = 48768

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    aattttaagtggaaaggaaaagca 44
             |||||||||||||||| |||||||
Sbjct: 15014 aattttaagtggaaagaaaaagca 14991
to top
>gb|AC155332.10| Mus musculus 6 BAC RP24-140J8 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 202181

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    aatgacaagaaaaaacaatt 123
              ||||||||||||||||||||
Sbjct: 107295 aatgacaagaaaaaacaatt 107314
to top
>emb|BX323543.11| Zebrafish DNA sequence from clone DKEYP-67E1 in linkage group 25,
              complete sequence
          Length = 181520

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     caggtccaaatgacaagaaa 115
              ||||||||||||||||||||
Sbjct: 141185 caggtccaaatgacaagaaa 141166
to top
>gb|AC103891.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1175C11,
             complete sequence
          Length = 123620

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    attttaagtggaaaggaaaa 41
             ||||||||||||||||||||
Sbjct: 44798 attttaagtggaaaggaaaa 44779
to top
>gb|AC109998.2| Homo sapiens chromosome 5 clone CTD-2203A3, complete sequence
          Length = 126394

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 102  caaatgacaagaaaaaacaa 121
            ||||||||||||||||||||
Sbjct: 1024 caaatgacaagaaaaaacaa 1005
to top
>gb|AC091903.2| Homo sapiens chromosome 5 clone RP11-182I21, complete sequence
          Length = 194860

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   caaatgacaagaaaaaacaa 121
             ||||||||||||||||||||
Sbjct: 53535 caaatgacaagaaaaaacaa 53554
to top
>gb|AC158672.6| Mus musculus 6 BAC RP23-64J23 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 216954

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 104  aatgacaagaaaaaacaatt 123
            ||||||||||||||||||||
Sbjct: 1310 aatgacaagaaaaaacaatt 1329
to top
>emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in linkage group 1,
             complete sequence
          Length = 209946

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   aaatgacaagaaaaaacaat 122
             ||||||||||||||||||||
Sbjct: 70661 aaatgacaagaaaaaacaat 70680
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 22      attttaagtggaaaggaaaa 41
               ||||||||||||||||||||
Sbjct: 7035462 attttaagtggaaaggaaaa 7035481
to top
>emb|AL132668.4|CNS01DT9 Human chromosome 14 DNA sequence BAC R-550M19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175725

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 105    atgacaagaaaaaacaatta 124
              ||||||||||||||||||||
Sbjct: 137047 atgacaagaaaaaacaatta 137066
to top
>ref|XM_638872.1| Dictyostelium discoideum hypothetical protein (DDB0217493), partial
           mRNA
          Length = 1761

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 19  aaaattttaagtggaaagg 37
           |||||||||||||||||||
Sbjct: 506 aaaattttaagtggaaagg 524
to top
>gb|AC153148.4| Mus musculus BAC clone RP23-189N11 from chromosome 5, complete sequence
          Length = 229020

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 106    tgacaagaaaaaacaatta 124
              |||||||||||||||||||
Sbjct: 102366 tgacaagaaaaaacaatta 102384
to top
>gb|AC115629.3| Mus musculus BAC clone RP23-74J16 from chromosome 5, complete sequence
          Length = 242126

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 106   tgacaagaaaaaacaatta 124
             |||||||||||||||||||
Sbjct: 26625 tgacaagaaaaaacaatta 26643
to top
>emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2-17h8, COMPLETE SEQUENCE
          Length = 114811

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    aaaggaaaagcacttcata 51
             |||||||||||||||||||
Sbjct: 72053 aaaggaaaagcacttcata 72035
to top
>emb|Z47357.1|CEZK1128 Caenorhabditis elegans Cosmid ZK1128, complete sequence
          Length = 27832

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 103   aaatgacaagaaaaaacaa 121
             |||||||||||||||||||
Sbjct: 17292 aaatgacaagaaaaaacaa 17310
to top
>gb|AC084384.1| Mus musculus BAC clone RP23-24F24 from 15, complete sequence
          Length = 208833

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     aagcacttcatatgttagt 58
              |||||||||||||||||||
Sbjct: 123913 aagcacttcatatgttagt 123931
to top
>gb|AC119236.8| Mus musculus chromosome 19, clone RP24-213B12, complete sequence
          Length = 163348

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 44    acttcatatgttagttaaa 62
             |||||||||||||||||||
Sbjct: 73187 acttcatatgttagttaaa 73205
to top
>gb|AC159807.2| Mus musculus BAC clone RP24-399D3 from chromosome 12, complete sequence
          Length = 131785

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    taagtggaaaggaaaagca 44
             |||||||||||||||||||
Sbjct: 51113 taagtggaaaggaaaagca 51095
to top
>gb|AC144375.14| Medicago truncatula clone mth2-11p13, complete sequence
          Length = 123953

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 59    taaaggtgactgactgcca 77
             |||||||||||||||||||
Sbjct: 67450 taaaggtgactgactgcca 67432
to top
>emb|AL391260.13| Human DNA sequence from clone RP11-328B14 on chromosome 10, complete
              sequence
          Length = 172771

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     ttttaagtggaaaggaaaa 41
              |||||||||||||||||||
Sbjct: 103166 ttttaagtggaaaggaaaa 103184
to top
>emb|AL157819.15| Human DNA sequence from clone RP11-480G1 on chromosome 13q13.1-14.3
             Contains a novel gene, complete sequence
          Length = 110911

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 26    taagtggaaaggaaaagca 44
             |||||||||||||||||||
Sbjct: 34028 taagtggaaaggaaaagca 34010
to top
>gb|AC106128.6| Rattus norvegicus 1 BAC CH230-149H17 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 210385

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 44     acttcatatgttagttaaa 62
              |||||||||||||||||||
Sbjct: 144636 acttcatatgttagttaaa 144654
to top
>emb|BX927069.11| Zebrafish DNA sequence from clone DKEY-24C22 in linkage group 23,
             complete sequence
          Length = 162588

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 99    gtccaaatgacaagaaaaaacaa 121
             |||||||||| ||||||||||||
Sbjct: 61004 gtccaaatgaaaagaaaaaacaa 60982
to top
>gb|AC136286.30| Medicago truncatula clone mth2-6c9, complete sequence
          Length = 127568

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 108   acaagaaaaaacaattata 126
             |||||||||||||||||||
Sbjct: 65777 acaagaaaaaacaattata 65759
to top
>dbj|AB219239.1| Ciona intestinalis mRNA for GnRH-like hexadecapeptide, complete cds
          Length = 756

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 103 aaatgacaagaaaaaacaa 121
           |||||||||||||||||||
Sbjct: 416 aaatgacaagaaaaaacaa 398
to top
>ref|NM_001039882.1| Ciona intestinalis GnRH-like hexadecapeptide (LOC664635), mRNA
          Length = 756

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 103 aaatgacaagaaaaaacaa 121
           |||||||||||||||||||
Sbjct: 416 aaatgacaagaaaaaacaa 398
to top
>gb|AY081217.1| Daucus carota leucine-rich receptor-like protein kinase mRNA, partial
            cds
          Length = 2196

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 78   gtttccatcctgcaggttc 96
            |||||||||||||||||||
Sbjct: 2170 gtttccatcctgcaggttc 2188
to top
>gb|AC096763.2| Homo sapiens BAC clone RP11-625A6 from 4, complete sequence
          Length = 168710

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 100   tccaaatgacaagaaaaaa 118
             |||||||||||||||||||
Sbjct: 61663 tccaaatgacaagaaaaaa 61681
to top
>gb|BC045945.1| Danio rerio smu-1 suppressor of mec-8 and unc-52 homolog (C.
            elegans), mRNA (cDNA clone MGC:56147 IMAGE:5412261),
            complete cds
          Length = 1954

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 104  aatgacaagaaaaaacaat 122
            |||||||||||||||||||
Sbjct: 1892 aatgacaagaaaaaacaat 1874
to top
>ref|NM_200199.1| Danio rerio smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)
            (smu1), mRNA
          Length = 1954

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 104  aatgacaagaaaaaacaat 122
            |||||||||||||||||||
Sbjct: 1892 aatgacaagaaaaaacaat 1874
to top
>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4,
              complete sequence
          Length = 333321

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 19     aaaattttaagtggaaagg 37
              |||||||||||||||||||
Sbjct: 110672 aaaattttaagtggaaagg 110690
to top
>ref|XM_342883.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2310026E23
            (LOC362564), mRNA
          Length = 1999

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 29   gtggaaaggaaaagcactt 47
            |||||||||||||||||||
Sbjct: 1850 gtggaaaggaaaagcactt 1868
to top
>emb|BX530067.4| Zebrafish DNA sequence from clone DKEY-194C21 in linkage group 19,
             complete sequence
          Length = 203882

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 87    ctgcaggttcaggtccaaa 105
             |||||||||||||||||||
Sbjct: 80906 ctgcaggttcaggtccaaa 80888
to top
>emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 in linkage group 2,
             complete sequence
          Length = 185178

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 111   agaaaaaacaattatactt 129
             |||||||||||||||||||
Sbjct: 57620 agaaaaaacaattatactt 57602
to top
>emb|AL954221.1| Pan troglodytes chromosome 22 clone RP43-105F23 map q21.2, complete
             sequence
          Length = 169077

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 67    actgactgccagtttccat 85
             |||||||||||||||||||
Sbjct: 81625 actgactgccagtttccat 81643
to top
>gb|AC151978.3| Mus musculus BAC clone RP24-545C19 from 19, complete sequence
          Length = 163426

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 44     acttcatatgttagttaaa 62
              |||||||||||||||||||
Sbjct: 153258 acttcatatgttagttaaa 153240
to top
>emb|BX537358.5| Zebrafish DNA sequence from clone DKEY-98L9 in linkage group 4, complete
              sequence
          Length = 230105

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 100    tccaaatgacaagaaaaaacaat 122
              |||||||||||||||||| ||||
Sbjct: 164650 tccaaatgacaagaaaaatcaat 164628
to top
>gb|AC007786.1|AC007786 Homo sapiens chromosome 19, BAC 41855 (CIT-B-32o4), complete sequence
          Length = 229061

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 108    acaagaaaaaacaattata 126
              |||||||||||||||||||
Sbjct: 134299 acaagaaaaaacaattata 134317
to top
>dbj|AB086394.1| Xenopus laevis cer gene for cerberus, complete cds
          Length = 7367

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 103  aaatgacaagaaaaaacaa 121
            |||||||||||||||||||
Sbjct: 997  aaatgacaagaaaaaacaa 1015
to top
>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 111    agaaaaaacaattatactt 129
              |||||||||||||||||||
Sbjct: 767198 agaaaaaacaattatactt 767216
to top
>emb|AL732497.15| Mouse DNA sequence from clone RP23-130H14 on chromosome 4, complete
              sequence
          Length = 208663

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 103    aaatgacaagaaaaaacaa 121
              |||||||||||||||||||
Sbjct: 178887 aaatgacaagaaaaaacaa 178905
to top
>emb|AL954769.9| Zebrafish DNA sequence from clone CH211-262A21 in linkage group 7,
             complete sequence
          Length = 145555

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 81    tccatcctgcaggttcagg 99
             |||||||||||||||||||
Sbjct: 94240 tccatcctgcaggttcagg 94258
to top
>emb|AL603804.18| Mouse DNA sequence from clone RP23-470C16 on chromosome 11, complete
             sequence
          Length = 189196

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 44    acttcatatgttagttaaa 62
             |||||||||||||||||||
Sbjct: 51359 acttcatatgttagttaaa 51341
to top
>emb|AL670464.12| Mouse DNA sequence from clone RP23-12I24 on chromosome 4, complete
             sequence
          Length = 203558

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 104   aatgacaagaaaaaacaat 122
             |||||||||||||||||||
Sbjct: 83588 aatgacaagaaaaaacaat 83570


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,869,286
Number of Sequences: 3902068
Number of extensions: 1869286
Number of successful extensions: 148930
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148662
Number of HSP's gapped (non-prelim): 268
length of query: 129
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 108
effective length of database: 17,151,101,840
effective search space: 1852318998720
effective search space used: 1852318998720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top