Clone Name | rbastl23g08 |
---|---|
Clone Library Name | barley_pub |
>gb|AF039044.1| Caenorhabditis elegans cosmid F48G7, complete sequence Length = 31549 Score = 42.1 bits (21), Expect = 0.24 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 tgtgttgtgtcaaaagaaaaa 87 ||||||||||||||||||||| Sbjct: 25190 tgtgttgtgtcaaaagaaaaa 25210
>ref|NM_070874.1| Caenorhabditis elegans Serpentine Receptor, class J family member (srj-37) (srj-37) mRNA, complete cds Length = 1002 Score = 42.1 bits (21), Expect = 0.24 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 tgtgttgtgtcaaaagaaaaa 87 ||||||||||||||||||||| Sbjct: 927 tgtgttgtgtcaaaagaaaaa 947
>gb|AC133090.4| Mus musculus BAC clone RP24-194H23 from chromosome 15, complete sequence Length = 148555 Score = 38.2 bits (19), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 24 tgtgggtcctgtccactccgttg 46 |||||||||||||||||| |||| Sbjct: 130628 tgtgggtcctgtccactctgttg 130606
>emb|CR450795.8| Zebrafish DNA sequence from clone CH211-203J19 in linkage group 23, complete sequence Length = 162230 Score = 38.2 bits (19), Expect = 3.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 tgttgtgtcaaaagaaaaa 87 ||||||||||||||||||| Sbjct: 131658 tgttgtgtcaaaagaaaaa 131640
>gb|AC153008.4| Mus musculus BAC clone RP23-457I7 from chromosome 15, complete sequence Length = 171878 Score = 38.2 bits (19), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 24 tgtgggtcctgtccactccgttg 46 |||||||||||||||||| |||| Sbjct: 142353 tgtgggtcctgtccactctgttg 142375
>gb|AC113167.2| Homo sapiens chromosome 5 clone CTC-529J12, complete sequence Length = 140187 Score = 38.2 bits (19), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 50 catgaattatggaatgctgtgtt 72 |||||||| |||||||||||||| Sbjct: 65711 catgaattttggaatgctgtgtt 65689
>emb|BX323989.4| Zebrafish DNA sequence from clone DKEY-101O12 in linkage group 23, complete sequence Length = 198365 Score = 38.2 bits (19), Expect = 3.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 tgttgtgtcaaaagaaaaa 87 ||||||||||||||||||| Sbjct: 4771 tgttgtgtcaaaagaaaaa 4789
>gb|AC008448.7| Homo sapiens chromosome 5 clone CTC-340N24, complete sequence Length = 156821 Score = 38.2 bits (19), Expect = 3.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 50 catgaattatggaatgctgtgtt 72 |||||||| |||||||||||||| Sbjct: 135166 catgaattttggaatgctgtgtt 135144
>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence Length = 110946 Score = 38.2 bits (19), Expect = 3.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 tgttgtgtcaaaagaaaaa 87 ||||||||||||||||||| Sbjct: 42575 tgttgtgtcaaaagaaaaa 42557
>gb|AY954961.1| Bacteriophage ROSA, complete genome Length = 43155 Score = 38.2 bits (19), Expect = 3.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 tgtgttgtgtcaaaagaaa 85 ||||||||||||||||||| Sbjct: 13513 tgtgttgtgtcaaaagaaa 13495
>gb|AY954960.1| Bacteriophage 96, complete genome Length = 43576 Score = 38.2 bits (19), Expect = 3.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 tgtgttgtgtcaaaagaaa 85 ||||||||||||||||||| Sbjct: 12788 tgtgttgtgtcaaaagaaa 12770
>emb|AL935161.18| Mouse DNA sequence from clone RP23-433M8 on chromosome 2, complete sequence Length = 144625 Score = 38.2 bits (19), Expect = 3.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 tgggttgtgggtcctgtcc 37 ||||||||||||||||||| Sbjct: 71458 tgggttgtgggtcctgtcc 71440
>dbj|AP006432.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14C18, TM0330, complete sequence Length = 109258 Score = 38.2 bits (19), Expect = 3.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 gctgtgttgtgtcaaaaga 83 ||||||||||||||||||| Sbjct: 30604 gctgtgttgtgtcaaaaga 30586 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 728,793 Number of Sequences: 3902068 Number of extensions: 728793 Number of successful extensions: 42724 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42707 Number of HSP's gapped (non-prelim): 17 length of query: 87 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 66 effective length of database: 17,151,101,840 effective search space: 1131972721440 effective search space used: 1131972721440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)