ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl23g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF039044.1| Caenorhabditis elegans cosmid F48G7, complete seq... 42 0.24
2ref|NM_070874.1| Caenorhabditis elegans Serpentine Receptor, cla... 42 0.24
3gb|AC133090.4| Mus musculus BAC clone RP24-194H23 from chromosom... 38 3.7
4emb|CR450795.8| Zebrafish DNA sequence from clone CH211-203J19 i... 38 3.7
5gb|AC153008.4| Mus musculus BAC clone RP23-457I7 from chromosome... 38 3.7
6gb|AC113167.2| Homo sapiens chromosome 5 clone CTC-529J12, compl... 38 3.7
7emb|BX323989.4| Zebrafish DNA sequence from clone DKEY-101O12 in... 38 3.7
8gb|AC008448.7| Homo sapiens chromosome 5 clone CTC-340N24, compl... 38 3.7
9gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete seq... 38 3.7
10gb|AY954961.1| Bacteriophage ROSA, complete genome 38 3.7
11gb|AY954960.1| Bacteriophage 96, complete genome 38 3.7
12emb|AL935161.18| Mouse DNA sequence from clone RP23-433M8 on chr... 38 3.7
13dbj|AP006432.1| Lotus japonicus genomic DNA, chromosome 4, clone... 38 3.7

>gb|AF039044.1| Caenorhabditis elegans cosmid F48G7, complete sequence
          Length = 31549

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 67    tgtgttgtgtcaaaagaaaaa 87
             |||||||||||||||||||||
Sbjct: 25190 tgtgttgtgtcaaaagaaaaa 25210



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>ref|NM_070874.1| Caenorhabditis elegans Serpentine Receptor, class J family member
           (srj-37) (srj-37) mRNA, complete cds
          Length = 1002

 Score = 42.1 bits (21), Expect = 0.24
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 67  tgtgttgtgtcaaaagaaaaa 87
           |||||||||||||||||||||
Sbjct: 927 tgtgttgtgtcaaaagaaaaa 947



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>gb|AC133090.4| Mus musculus BAC clone RP24-194H23 from chromosome 15, complete sequence
          Length = 148555

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 24     tgtgggtcctgtccactccgttg 46
              |||||||||||||||||| ||||
Sbjct: 130628 tgtgggtcctgtccactctgttg 130606



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>emb|CR450795.8| Zebrafish DNA sequence from clone CH211-203J19 in linkage group 23,
              complete sequence
          Length = 162230

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 69     tgttgtgtcaaaagaaaaa 87
              |||||||||||||||||||
Sbjct: 131658 tgttgtgtcaaaagaaaaa 131640



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>gb|AC153008.4| Mus musculus BAC clone RP23-457I7 from chromosome 15, complete sequence
          Length = 171878

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 24     tgtgggtcctgtccactccgttg 46
              |||||||||||||||||| ||||
Sbjct: 142353 tgtgggtcctgtccactctgttg 142375



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>gb|AC113167.2| Homo sapiens chromosome 5 clone CTC-529J12, complete sequence
          Length = 140187

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 50    catgaattatggaatgctgtgtt 72
             |||||||| ||||||||||||||
Sbjct: 65711 catgaattttggaatgctgtgtt 65689



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>emb|BX323989.4| Zebrafish DNA sequence from clone DKEY-101O12 in linkage group 23,
            complete sequence
          Length = 198365

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 69   tgttgtgtcaaaagaaaaa 87
            |||||||||||||||||||
Sbjct: 4771 tgttgtgtcaaaagaaaaa 4789



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>gb|AC008448.7| Homo sapiens chromosome 5 clone CTC-340N24, complete sequence
          Length = 156821

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 50     catgaattatggaatgctgtgtt 72
              |||||||| ||||||||||||||
Sbjct: 135166 catgaattttggaatgctgtgtt 135144



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>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
          Length = 110946

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    tgttgtgtcaaaagaaaaa 87
             |||||||||||||||||||
Sbjct: 42575 tgttgtgtcaaaagaaaaa 42557



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>gb|AY954961.1| Bacteriophage ROSA, complete genome
          Length = 43155

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 67    tgtgttgtgtcaaaagaaa 85
             |||||||||||||||||||
Sbjct: 13513 tgtgttgtgtcaaaagaaa 13495



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>gb|AY954960.1| Bacteriophage 96, complete genome
          Length = 43576

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 67    tgtgttgtgtcaaaagaaa 85
             |||||||||||||||||||
Sbjct: 12788 tgtgttgtgtcaaaagaaa 12770



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>emb|AL935161.18| Mouse DNA sequence from clone RP23-433M8 on chromosome 2, complete
             sequence
          Length = 144625

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    tgggttgtgggtcctgtcc 37
             |||||||||||||||||||
Sbjct: 71458 tgggttgtgggtcctgtcc 71440



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>dbj|AP006432.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14C18, TM0330,
             complete sequence
          Length = 109258

 Score = 38.2 bits (19), Expect = 3.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    gctgtgttgtgtcaaaaga 83
             |||||||||||||||||||
Sbjct: 30604 gctgtgttgtgtcaaaaga 30586


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 728,793
Number of Sequences: 3902068
Number of extensions: 728793
Number of successful extensions: 42724
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42707
Number of HSP's gapped (non-prelim): 17
length of query: 87
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 66
effective length of database: 17,151,101,840
effective search space: 1131972721440
effective search space used: 1131972721440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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