ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl23g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
2dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
3ref|XM_478769.1| Oryza sativa (japonica cultivar-group), mRNA 68 2e-08
4ref|XM_478770.1| Oryza sativa (japonica cultivar-group), mRNA 66 6e-08
5dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 6e-08
6gb|AY107748.1| Zea mays PCO123054 mRNA sequence 48 0.015
7gb|AC153595.27| Mus musculus 6 BAC RP23-140J24 (Roswell Park Can... 44 0.23
8gb|AY692766.1| Saccharomyces cerevisiae clone FLH112911.01X YFR0... 42 0.92
9gb|AC010196.5| Homo sapiens 12 BAC RP11-202H2 (Roswell Park Canc... 42 0.92
10gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, com... 42 0.92
11gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosom... 42 0.92
12gb|AC091534.7| Homo sapiens 12 BAC RP11-404O18 (Roswell Park Can... 42 0.92
13dbj|AP006351.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 0.92
14dbj|D50617.1|YSCCHRVIN Saccharomyces cerevisiae chromosome VI co... 42 0.92
15ref|NM_115484.2| Arabidopsis thaliana unknown protein AT3G56260 ... 40 3.6
16gb|AC145817.1| Pan troglodytes BAC clone RP43-6C4 from 7, comple... 40 3.6
17gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete s... 40 3.6
18gb|AC108510.3| Homo sapiens chromosome 7 clone RP11-98O9, comple... 40 3.6
19emb|AL163763.1|ATF18O21 Arabidopsis thaliana DNA chromosome 3, B... 40 3.6
20emb|BX510940.8| Zebrafish DNA sequence from clone DKEYP-69C1 in ... 40 3.6
21gb|AC027152.11| Homo sapiens chromosome 17, clone RP11-456D7, co... 40 3.6
22gb|AC026225.5| Homo sapiens chromosome 10 clone RP11-78C6, compl... 40 3.6
23gb|AC090214.3| Homo sapiens chromosome 18, clone RP11-800G9, com... 40 3.6
24gb|AC104260.5| Homo sapiens chromosome 15, clone CTD-2536I1, com... 40 3.6
25gb|AF399011.1| Pseudomonas phage phiKZ, complete genome 40 3.6
26gb|DQ163920.1| Bacteriophage SD1-M, complete genome 40 3.6
27gb|AF077255.1|AF077255 Littorina scutulata isolate Scut18 cytoch... 40 3.6
28gb|AF077254.1|AF077254 Littorina scutulata isolate Scut17 cytoch... 40 3.6
29gb|AF077253.1|AF077253 Littorina scutulata isolate Scut16 cytoch... 40 3.6
30gb|AF077251.1|AF077251 Littorina scutulata isolate Scut14 cytoch... 40 3.6
31gb|AF077249.1|AF077249 Littorina scutulata isolate Scut12 cytoch... 40 3.6
32gb|AF077248.1|AF077248 Littorina scutulata isolate Scut11 cytoch... 40 3.6
33gb|AF077247.1|AF077247 Littorina scutulata isolate Scut10 cytoch... 40 3.6
34gb|AF077246.1|AF077246 Littorina scutulata isolate Scut9 cytochr... 40 3.6
35gb|AF077244.1|AF077244 Littorina scutulata isolate Scut7 cytochr... 40 3.6
36gb|AF077243.1|AF077243 Littorina scutulata isolate Scut6 cytochr... 40 3.6
37gb|AF077242.1|AF077242 Littorina scutulata isolate Scut5 cytochr... 40 3.6
38gb|AF077239.1|AF077239 Littorina scutulata isolate Scut2 cytochr... 40 3.6
39gb|AF077238.1|AF077238 Littorina scutulata isolate Scut1 cytochr... 40 3.6
40gb|AF023609.1|AF023609 Littorina subrotundata cytochrome b gene,... 40 3.6
41gb|AF023608.1|AF023608 Littorina subrotundata cytochrome b gene,... 40 3.6
42gb|AF023607.1|AF023607 Littorina subrotundata cytochrome b gene,... 40 3.6
43gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromos... 40 3.6
44gb|U46797.1|LHU46797 Littorina horikawai cytochrome b gene, mito... 40 3.6
45emb|AL671331.6| Mouse DNA sequence from clone RP23-126C18 on chr... 40 3.6 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                        
Query: 223      gttgtcctatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtc 278
                |||| |||||| |||||||||||||  ||| |||||||||||||||||||||||||
Sbjct: 22922081 gttgacctataacttcatctgaccaatacctcctttgaatgaaccatataaaggtc 22922136



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                   
Query: 228      cctatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtc 278
                |||||||||||||||||||| |||| || ||||||||||| ||||||||||
Sbjct: 22885749 cctatagcttcatctgaccaacacctcccttgaatgaaccgtataaaggtc 22885799



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                                 
Query: 230      tatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtc 278
                |||||||||||||||||| |||| || ||| ||||||||||||||||||
Sbjct: 22902280 tatagcttcatctgaccaacacctcccttgtatgaaccatataaaggtc 22902328
to top
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1019_E02
          Length = 121607

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                      
Query: 223    gttgtcctatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtc 278
              |||| |||||| |||||||||||||  ||| |||||||||||||||||||||||||
Sbjct: 115348 gttgacctataacttcatctgaccaatacctcctttgaatgaaccatataaaggtc 115403



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 47/51 (92%)
 Strand = Plus / Plus

                                                                
Query: 228   cctatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtc 278
             |||||||||||||||||||| |||| || ||||||||||| ||||||||||
Sbjct: 79016 cctatagcttcatctgaccaacacctcccttgaatgaaccgtataaaggtc 79066



 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 45/49 (91%)
 Strand = Plus / Plus

                                                              
Query: 230   tatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtc 278
             |||||||||||||||||| |||| || ||| ||||||||||||||||||
Sbjct: 95547 tatagcttcatctgaccaacacctcccttgtatgaaccatataaaggtc 95595
to top
>ref|XM_478769.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2997

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                              
Query: 229  ctatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtc 278
            ||||||||||||||||||| |||| || ||||||||||| ||||||||||
Sbjct: 2997 ctatagcttcatctgaccaacacctcccttgaatgaaccgtataaaggtc 2948
to top
>ref|XM_478770.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3199

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 230  tatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtc 278
            |||||||||||||||||| |||| || ||| ||||||||||||||||||
Sbjct: 3107 tatagcttcatctgaccaacacctcccttgtatgaaccatataaaggtc 3059
to top
>dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F09, full
            insert sequence
          Length = 3200

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                             
Query: 230  tatagcttcatctgaccagcaccacctttgaatgaaccatataaaggtc 278
            |||||||||||||||||| |||| || ||| ||||||||||||||||||
Sbjct: 3107 tatagcttcatctgaccaacacctcccttgtatgaaccatataaaggtc 3059
to top
>gb|AY107748.1| Zea mays PCO123054 mRNA sequence
          Length = 1762

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 229  ctatagcttcatctgaccagcaccacctttgaatgaaccatataaagg 276
            ||||||||||||||||||| | || ||  ||||||| |||||||||||
Sbjct: 1677 ctatagcttcatctgaccaacgcctcccctgaatgatccatataaagg 1630
to top
>gb|AC153595.27| Mus musculus 6 BAC RP23-140J24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 225736

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 186    aaaatacaagttgaatgtaaataaga 211
              |||||||||||||||||||| |||||
Sbjct: 189037 aaaatacaagttgaatgtaattaaga 189062
to top
>gb|AY692766.1| Saccharomyces cerevisiae clone FLH112911.01X YFR005C gene, complete
           cds
          Length = 1347

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 95  caacatgtaaaacttcaaact 115
           |||||||||||||||||||||
Sbjct: 297 caacatgtaaaacttcaaact 277
to top
>gb|AC010196.5| Homo sapiens 12 BAC RP11-202H2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163246

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   acttcaaactaatatgtatgg 126
             |||||||||||||||||||||
Sbjct: 67922 acttcaaactaatatgtatgg 67942
to top
>gb|AC164154.2| Mus musculus chromosome 18, clone RP23-60G12, complete sequence
          Length = 238662

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 156    catttgtcccacacattattttctt 180
              ||||||||||||||||| |||||||
Sbjct: 161413 catttgtcccacacattgttttctt 161437
to top
>gb|AC164106.3| Mus musculus BAC clone RP23-445D20 from chromosome 18, complete
             sequence
          Length = 195721

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 156   catttgtcccacacattattttctt 180
             ||||||||||||||||| |||||||
Sbjct: 98090 catttgtcccacacattgttttctt 98114
to top
>gb|AC091534.7| Homo sapiens 12 BAC RP11-404O18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 185576

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 186    aaaatacaagttgaatgtaaa 206
              |||||||||||||||||||||
Sbjct: 180277 aaaatacaagttgaatgtaaa 180297
to top
>dbj|AP006351.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT04E21, TM0336,
           complete sequence
          Length = 113233

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 227 tcctatagcttcatctgacca 247
           |||||||||||||||||||||
Sbjct: 799 tcctatagcttcatctgacca 779
to top
>dbj|D50617.1|YSCCHRVIN Saccharomyces cerevisiae chromosome VI complete DNA sequence
          Length = 270148

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 95     caacatgtaaaacttcaaact 115
              |||||||||||||||||||||
Sbjct: 155571 caacatgtaaaacttcaaact 155591
to top
>ref|NM_115484.2| Arabidopsis thaliana unknown protein AT3G56260 mRNA, complete cds
          Length = 1010

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 ttattttctttaggaaaaat 190
           ||||||||||||||||||||
Sbjct: 26  ttattttctttaggaaaaat 7
to top
>gb|AC145817.1| Pan troglodytes BAC clone RP43-6C4 from 7, complete sequence
          Length = 134049

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   agtgagaacatttgtcccac 167
             ||||||||||||||||||||
Sbjct: 85843 agtgagaacatttgtcccac 85862
to top
>gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete sequence
          Length = 129414

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 185   aaaaatacaagttgaatgtaaata 208
             ||||||||||||||| ||||||||
Sbjct: 77593 aaaaatacaagttgattgtaaata 77616
to top
>gb|AC108510.3| Homo sapiens chromosome 7 clone RP11-98O9, complete sequence
          Length = 74746

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   agtgagaacatttgtcccac 167
             ||||||||||||||||||||
Sbjct: 31688 agtgagaacatttgtcccac 31669
to top
>emb|AL163763.1|ATF18O21 Arabidopsis thaliana DNA chromosome 3, BAC clone F18O21
          Length = 99492

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 171   ttattttctttaggaaaaat 190
             ||||||||||||||||||||
Sbjct: 71939 ttattttctttaggaaaaat 71958
to top
>emb|BX510940.8| Zebrafish DNA sequence from clone DKEYP-69C1 in linkage group 21,
              complete sequence
          Length = 172605

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 99     atgtaaaacttcaaactaatatgt 122
              ||||||||||||||| ||||||||
Sbjct: 113691 atgtaaaacttcaaaataatatgt 113714
to top
>gb|AC027152.11| Homo sapiens chromosome 17, clone RP11-456D7, complete sequence
          Length = 132735

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    taaaacttcaaactaatatg 121
              ||||||||||||||||||||
Sbjct: 101957 taaaacttcaaactaatatg 101976
to top
>gb|AC026225.5| Homo sapiens chromosome 10 clone RP11-78C6, complete sequence
          Length = 201173

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     acatgtaaaacttcaaacta 116
              ||||||||||||||||||||
Sbjct: 195685 acatgtaaaacttcaaacta 195704
to top
>gb|AC090214.3| Homo sapiens chromosome 18, clone RP11-800G9, complete sequence
          Length = 95648

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   attattttctttaggaaaaa 189
             ||||||||||||||||||||
Sbjct: 32992 attattttctttaggaaaaa 32973
to top
>gb|AC104260.5| Homo sapiens chromosome 15, clone CTD-2536I1, complete sequence
          Length = 191528

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 171   ttattttctttaggaaaaatacaa 194
             |||||||||||| |||||||||||
Sbjct: 59280 ttattttctttaagaaaaatacaa 59303
to top
>gb|AF399011.1| Pseudomonas phage phiKZ, complete genome
          Length = 280334

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    gaatatattcagcctagcca 145
              ||||||||||||||||||||
Sbjct: 258321 gaatatattcagcctagcca 258340
to top
>gb|DQ163920.1| Bacteriophage SD1-M, complete genome
          Length = 281083

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    gaatatattcagcctagcca 145
              ||||||||||||||||||||
Sbjct: 259070 gaatatattcagcctagcca 259089
to top
>gb|AF077255.1|AF077255 Littorina scutulata isolate Scut18 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077254.1|AF077254 Littorina scutulata isolate Scut17 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077253.1|AF077253 Littorina scutulata isolate Scut16 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077251.1|AF077251 Littorina scutulata isolate Scut14 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077249.1|AF077249 Littorina scutulata isolate Scut12 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077248.1|AF077248 Littorina scutulata isolate Scut11 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077247.1|AF077247 Littorina scutulata isolate Scut10 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077246.1|AF077246 Littorina scutulata isolate Scut9 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077244.1|AF077244 Littorina scutulata isolate Scut7 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077243.1|AF077243 Littorina scutulata isolate Scut6 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077242.1|AF077242 Littorina scutulata isolate Scut5 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077239.1|AF077239 Littorina scutulata isolate Scut2 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF077238.1|AF077238 Littorina scutulata isolate Scut1 cytochrome b gene, mitochondrial
           gene encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF023609.1|AF023609 Littorina subrotundata cytochrome b gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF023608.1|AF023608 Littorina subrotundata cytochrome b gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AF023607.1|AF023607 Littorina subrotundata cytochrome b gene, mitochondrial gene
           encoding mitochondrial protein, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromosome unknown, complete
              sequence
          Length = 267345

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 102    taaaacttcaaactaatatgtatg 125
              |||||||||||| |||||||||||
Sbjct: 230319 taaaacttcaaagtaatatgtatg 230296
to top
>gb|U46797.1|LHU46797 Littorina horikawai cytochrome b gene, mitochondrial gene encoding
           mitochondrial protein, partial cds
          Length = 671

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 tttaggaaaaatacaagttgaatg 202
           |||||||||||||| |||||||||
Sbjct: 406 tttaggaaaaatactagttgaatg 429
to top
>emb|AL671331.6| Mouse DNA sequence from clone RP23-126C18 on chromosome X, complete
             sequence
          Length = 107095

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   tattttctttaggaaaaata 191
             ||||||||||||||||||||
Sbjct: 49501 tattttctttaggaaaaata 49520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,320,522
Number of Sequences: 3902068
Number of extensions: 3320522
Number of successful extensions: 67380
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67303
Number of HSP's gapped (non-prelim): 77
length of query: 278
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 256
effective length of database: 17,147,199,772
effective search space: 4389683141632
effective search space used: 4389683141632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top