ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl23c01 |
|---|---|
| Clone Library Name | barley_pub |
>PLDD1_ARATH (Q9C5Y0) Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD| delta) Length = 868 Score = 60.8 bits (146), Expect = 8e-10 Identities = 28/44 (63%), Positives = 37/44 (84%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPT-SLPDSLTT 248 L++YP++V+ DGK+ PLPD E FPDVGGKI GA + +LPD+LTT Sbjct: 825 LIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868
>PLDB1_ARATH (P93733) Phospholipase D beta 1 (EC 3.1.4.4) (AtPLDbeta1) (PLD beta| 1) (PLDbeta) Length = 967 Score = 49.7 bits (117), Expect = 2e-06 Identities = 22/42 (52%), Positives = 30/42 (71%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLT 251 LL+YPV+V+ GK+ PLP E FPDVGG I G ++ ++LT Sbjct: 925 LLKYPVEVDRKGKVRPLPGSETFPDVGGNIVGTFIAIQENLT 966
>PLDG2_ARATH (Q9T051) Phospholipase D gamma 2 (EC 3.1.4.4) (AtPLDgamma2) (PLD| gamma 2) Length = 824 Score = 48.1 bits (113), Expect = 5e-06 Identities = 22/42 (52%), Positives = 31/42 (73%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLT 251 LL+YPV+V+ GK+ LP E FPD+GGKI G+ +L ++LT Sbjct: 782 LLKYPVQVDKTGKVSSLPGCETFPDLGGKIIGSFLTLQENLT 823
>PLDG1_ARATH (Q9T053) Phospholipase D gamma 1 (EC 3.1.4.4) (AtPLDgamma1) (PLD| gamma 1) (Choline phosphatase) (Lipophosphodiesterase II) (Lecithinase D) Length = 858 Score = 47.8 bits (112), Expect = 7e-06 Identities = 22/42 (52%), Positives = 31/42 (73%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLT 251 LL+YPV+V+ GK+ LP E FPD+GGKI G+ +L ++LT Sbjct: 816 LLKYPVQVDRTGKVSSLPGCETFPDLGGKIIGSFLALQENLT 857
>PLDB2_ARATH (O23078) Phospholipase D beta 2 (EC 3.1.4.4) (AtPLDbeta2) (PLD beta| 2) (PLDdelta1) Length = 915 Score = 47.8 bits (112), Expect = 7e-06 Identities = 20/42 (47%), Positives = 31/42 (73%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLT 251 L++YPV+V+ GK+ PLP E FPDVGG + G+ ++ ++LT Sbjct: 873 LMKYPVEVDRKGKVRPLPGSEEFPDVGGNVVGSFLAIQENLT 914
>PLDG3_ARATH (Q9T052) Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLDgamma3) (PLD| gamma 3) Length = 866 Score = 46.2 bits (108), Expect = 2e-05 Identities = 21/42 (50%), Positives = 30/42 (71%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLT 251 LL+YPV+V+ GK+ LP E FPD+GGKI G+ + ++LT Sbjct: 824 LLKYPVQVDRTGKVSSLPGYETFPDLGGKIIGSFLVVEENLT 865
>PLDA1_PIMBR (O04883) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 40.8 bits (94), Expect = 8e-04 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLTT 248 LLRYP+ V +G + LP E FPD ++ GA + LP LTT Sbjct: 765 LLRYPIAVASEGNVTELPGTEFFPDTKARVLGAKSDFLPPILTT 808
>PLDA1_VIGUN (O04865) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 809 Score = 40.0 bits (92), Expect = 0.001 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLTT 248 LLRYP+ V +G++ LP E FPD +I GA LP LTT Sbjct: 766 LLRYPIGVASEGEVTELPGFEFFPDTKARILGAKADYLPPILTT 809
>PLDA1_RICCO (Q41142) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 40.0 bits (92), Expect = 0.001 Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLTT 248 LLRYP+ V +G + LP E FPD ++ GA + LP LTT Sbjct: 765 LLRYPIGVASEGDVTELPGTEFFPDTKARVLGAKSDYLPPILTT 808
>PLDA2_ORYSA (P93844) Phospholipase D alpha 2 (EC 3.1.4.4) (PLD alpha 2)| (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) Length = 818 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLTT 248 LL YPV+V +G + LP + FPD + G +LP LTT Sbjct: 776 LLTYPVRVTKEGTVTELPGAKFFPDTQAPVIGTKGNLPPFLTT 818
>PLDA2_BRAOC (P55939) Phospholipase D alpha 2 precursor (EC 3.1.4.4) (PLD 2)| (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) Length = 812 Score = 38.5 bits (88), Expect = 0.004 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLTT 248 LLRYP+ V+ +G I LP E FPD +I G LP LTT Sbjct: 769 LLRYPISVDNEGNITELPGFEFFPDSKARILGNKVDYLPPILTT 812
>PLDA1_ARATH (Q38882) Phospholipase D alpha 1 (EC 3.1.4.4) (AtPLDalpha1) (PLD| alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) (PLDalpha) Length = 810 Score = 38.5 bits (88), Expect = 0.004 Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLTT 248 LLRYP+ V +G I LP E FPD +I G + LP LTT Sbjct: 767 LLRYPIGVASEGDITELPGFEFFPDTKARILGTKSDYLPPILTT 810
>PLDA1_TOBAC (P93400) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 808 Score = 38.1 bits (87), Expect = 0.005 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLTT 248 LLRYP+ V +G + LP E FPD ++ G + LP LTT Sbjct: 765 LLRYPIGVASEGDVTELPGAEHFPDTKARVLGTKSDYLPPILTT 808
>PLDA1_BRAOC (O82549) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 810 Score = 38.1 bits (87), Expect = 0.005 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLTT 248 LLRYPV V+ +G + P E FPD +I G + LP LTT Sbjct: 767 LLRYPVDVDGEGDVTEFPGFEFFPDTKARILGTKSDYLPPILTT 810
>PLDA2_ARATH (Q9SSQ9) Phospholipase D alpha 2 (EC 3.1.4.4) (AtPLDalpha2) (PLD| alpha 2) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) Length = 810 Score = 37.7 bits (86), Expect = 0.007 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLTT 248 LLRYP+ + +G I LP E FPD +I G + +P LTT Sbjct: 767 LLRYPIGIASEGNITELPGCEFFPDTKARILGVKSDYMPPILTT 810
>PLDA1_MAIZE (Q43270) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1)| (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 812 Score = 37.4 bits (85), Expect = 0.009 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLTT 248 LL YP+ V DG + LP E FPD ++ G + LP LTT Sbjct: 769 LLSYPIGVTADGSVTELPGMENFPDTRARVLGNKSDYLPPILTT 812
>PLDA1_ORYSA (Q43007) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD alpha| 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) Length = 812 Score = 37.0 bits (84), Expect = 0.012 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLTT 248 LL YP+ V DG + LP E FPD ++ GA + +P LT+ Sbjct: 769 LLSYPIGVASDGVVTELPGMEYFPDTRARVLGAKSDYMPPILTS 812
>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)| Length = 1235 Score = 33.9 bits (76), Expect = 0.098 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -3 Query: 370 RYPVKVEPDGKIVPLPDQECFPDVGGKICGA 278 R+P +V+P+G ++ P C PD+GG C + Sbjct: 648 RHPQRVDPNGYMMMSPSGSCSPDIGGGSCSS 678
>PLDZ1_ARATH (P58766) Phospholipase D zeta (EC 3.1.4.4) (AtPLDzeta) (PLD zeta)| Length = 820 Score = 33.5 bits (75), Expect = 0.13 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -3 Query: 376 LLRYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTS-LPDSLTT 248 LL YP+ + +G++ L E FPD K+ G ++ LP LT+ Sbjct: 777 LLSYPISIGSNGEVTNLAGTEFFPDTNAKVVGEKSNYLPPILTS 820
>IRS1_HUMAN (P35568) Insulin receptor substrate 1 (IRS-1)| Length = 1242 Score = 32.0 bits (71), Expect = 0.37 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = -3 Query: 370 RYPVKVEPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLTT*RHGTDF 227 R+P +V+P+G ++ P C PD+G G P+S S GT + Sbjct: 652 RHPQRVDPNGYMMMSPSGGCSPDIG----GGPSSSSSSSNAVPSGTSY 695
>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)| Length = 1233 Score = 31.6 bits (70), Expect = 0.49 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -3 Query: 370 RYPVKVEPDGKIVPLPDQECFPDVGG 293 R+P +V+P+G ++ P C PD+GG Sbjct: 648 RHPQRVDPNGYMMMSPSGSCSPDIGG 673
>RL33_AQUAE (O67756) 50S ribosomal protein L33| Length = 50 Score = 31.2 bits (69), Expect = 0.64 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +1 Query: 25 VSCTDCRKKNLTKAHNSTTHREQPVLSLYATQC---VIHR 135 ++CT+C+++N T N H E+ L Y C IHR Sbjct: 8 LACTECKRRNYTTTKNKQKHPERLELRKYCKWCRKHTIHR 47
>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)| Length = 1251 Score = 30.8 bits (68), Expect = 0.83 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = -3 Query: 370 RYPVKVEPDGKIVPLPDQECFPDVGG 293 R+P +V+P+G ++ P C PD+GG Sbjct: 652 RHPQRVDPNGYMMMSPSGGCSPDIGG 677
>A2AP_BOVIN (P28800) Alpha-2-antiplasmin precursor (Alpha-2-plasmin inhibitor)| (Alpha-2-PI) (Alpha-2-AP) Length = 492 Score = 30.4 bits (67), Expect = 1.1 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Frame = +2 Query: 5 LSIDPVLSHVQT-VEKKILQRRTTLQHTVNSPCFPYTPHNV*STDYGAGYHHPLARQDIR 181 LS+ LSH+ + + LQR + H + PC P+ + D G G AR ++ Sbjct: 112 LSVALALSHLALGAQNQTLQRLKEVLHADSGPCLPHLLSRL-CQDLGPGAFRLAARMYLQ 170 Query: 182 RGFT-----GEQNNQLGL*REVSTVTSSRQRIRKRGRGAADLATDVGEAFLVGQRDDLTI 346 +GF EQ+ QL + +S + + R + E FL DD + Sbjct: 171 KGFPIKEDFLEQSEQLFGAKPMSLTGMKGEDLANINRWVKEATEGKIEDFLSDLPDDTVL 230 Query: 347 RL 352 L Sbjct: 231 LL 232
>ZAN_MOUSE (O88799) Zonadhesin precursor| Length = 5376 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%) Frame = -1 Query: 231 TSLQSPSWLFCS---PVKPLRMSCL 166 T+LQ P+W CS P+KP + C+ Sbjct: 2272 TALQGPAWAHCSSRVPIKPFLLKCM 2296
>MMHB_AGKHA (Q9YI92) Mamushigin beta chain precursor| Length = 146 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 8/49 (16%) Frame = -2 Query: 182 SECLVLPTDDDNLHRNLWIT--HCVAYRE------STGCSRCVVELCAF 60 +EC+V TD L N WIT C+A + S CSR +C F Sbjct: 96 NECMVEWTDGTRLSHNAWITESECIAAKTTDNQWLSRPCSRTYNVVCKF 144
>CNOT3_MOUSE (Q8K0V4) CCR4-NOT transcription complex subunit 3 (CCR4-associated| factor 3) Length = 751 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Frame = +3 Query: 174 TFGEVLQESKITSLDSEEKSVP*RQVVSESGSEVGAPQILPPTSGKH-----SWSGSGTI 338 T G +++ TS S P +S SG + Q L PTSG H + S T Sbjct: 414 TGGGAGKQNGATSYSSVVADSPAEVTLSSSGGSSASSQALGPTSGPHNPAPSTSKESSTA 473 Query: 339 LPSGS 353 PSG+ Sbjct: 474 APSGA 478
>RPOA_PRRS1 (Q9YN02) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3966 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -3 Query: 364 PVKVEPDGKIVPLPDQECFPDVGGKICGAPTSL 266 PVK P+ K VP P ++ PD CG+P SL Sbjct: 826 PVKSLPERKPVPAPRRKVGPD-----CGSPVSL 853
>CD2AP_HUMAN (Q9Y5K6) CD2-associated protein (Cas ligand with multiple SH3| domains) (Adapter protein CMS) Length = 639 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Frame = +3 Query: 186 VLQESKITSLDSEEKSVP*RQVVSESGSEVGAPQI-----LPPTSGKHSWSGSGTILP 344 + E K SL EEK + + + S+ APQ+ PPT + SGT+ P Sbjct: 355 IAAEKKYFSLKPEEKDE--KSTLEQKPSKPAAPQVPPKKPTPPTKASNLLRSSGTVYP 410
>SGOL1_MOUSE (Q9CXH7) Shugoshin-like 1| Length = 517 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = -3 Query: 352 EPDGKIVPLPDQECFPDVGGKICGAPTSLPDSLTT*RH-GTDFSSESKLVILLSCKTSPN 176 EP + P Q C D GK+ LP +++ RH DFS+ S L CK SP Sbjct: 154 EPSPAVTP-ETQGCDFD-SGKVESTDEVLPRTISIRRHLRKDFSNISHSTTLEDCKASPR 211 Query: 175 V 173 V Sbjct: 212 V 212
>JAG1B_BRARE (Q90Y54) Jagged-1b precursor (Jagged1b) (Jagged3)| Length = 1213 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 178 NVLSCQRMMITCTVICGSHIVWRIGKARAVHGVL*SCAPL 59 N+ CQ I CT++ RIGKAR SC P+ Sbjct: 878 NICQCQNGRIHCTMMWCGPKSCRIGKARGGCPASQSCVPI 917
>YAOH_SCHPO (Q10096) Hypothetical zinc finger protein C11D3.17 in chromosome I| Length = 585 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/29 (34%), Positives = 16/29 (55%) Frame = +1 Query: 16 PCPVSCTDCRKKNLTKAHNSTTHREQPVL 102 PCP C++K+L K H H ++ V+ Sbjct: 60 PCPYCEIKCKRKDLLKRHIQRFHNDKSVI 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,637,271 Number of Sequences: 219361 Number of extensions: 1180904 Number of successful extensions: 3412 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3296 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3411 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
