ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl23c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_450186.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
3dbj|AK100579.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
4dbj|AK058661.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
5dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
6gb|AE009123.1| Agrobacterium tumefaciens str. C58 circular chrom... 44 0.32
7gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 44 0.32
8gb|U40419.2| Caenorhabditis elegans cosmid C27F2, complete sequence 42 1.3
9gb|BC101324.2| Homo sapiens similar to CTAGE6, mRNA (cDNA clone ... 40 5.0
10gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genom... 40 5.0
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.0
12gb|AF271358.1| Oryza sativa (indica cultivar-group) phospholipas... 40 5.0
13gb|AC106862.3| Homo sapiens BAC clone RP11-61L23 from 7, complet... 40 5.0
14gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, comple... 40 5.0
15gb|AF338232.1| Homo sapiens CTAGE-4 protein mRNA, complete cds 40 5.0
16gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complet... 40 5.0
17gb|BC043153.2| Homo sapiens CTAGE family, member 6, mRNA (cDNA c... 40 5.0
18ref|NM_001008747.1| Homo sapiens similar to CTAGE6 (LOC441294), ... 40 5.0
19ref|XM_935638.1| PREDICTED: Homo sapiens similar to CTAGE family... 40 5.0
20ref|XM_499498.2| PREDICTED: Homo sapiens CTAGE family, member 6 ... 40 5.0
21ref|XM_936769.1| PREDICTED: Homo sapiens similar to CTAGE family... 40 5.0
22ref|XM_496933.2| PREDICTED: Homo sapiens similar to CTAGE family... 40 5.0
23ref|XM_498461.2| PREDICTED: Homo sapiens CTAGE family, member 6 ... 40 5.0
24ref|XM_928907.1| PREDICTED: Homo sapiens similar to CTAGE family... 40 5.0
25gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromo... 40 5.0
26dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
27gb|AF289199.1|AF289199 Mus musculus junctin and aspartyl beta-hy... 40 5.0
28dbj|AK069703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
29emb|AL135904.11| Human DNA sequence from clone RP5-1005H11 on ch... 40 5.0
30emb|AL773548.10| Mouse DNA sequence from clone RP23-70D2 on chro... 40 5.0
31gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complet... 40 5.0

>ref|XM_450186.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2532

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                        
Query: 288  atcttgccaccgacgtcggggaagcattcttggtcgggcagcgggacgatcttaccatca 347
            ||||||||||| ||||| || |||||||| || || ||||  ||  | | |||||| |||
Sbjct: 2489 atcttgccaccaacgtcaggaaagcattcgtgttctggcaatggaccaaccttaccgtca 2430

                                           
Query: 348  ggctctaccttcactgggtatctgaggaggt 378
            | ||||||||| ||||||||| |||||||||
Sbjct: 2429 gcctctaccttgactgggtatttgaggaggt 2399



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                            
Query: 288      atcttgccaccgacgtcggggaagcattcttggtcgggcagcgggacgatcttaccatca 347
                ||||||||||| ||||| || |||||||| || || ||||  ||  | | |||||| |||
Sbjct: 21096197 atcttgccaccaacgtcaggaaagcattcgtgttctggcaatggaccaaccttaccgtca 21096138

                                               
Query: 348      ggctctaccttcactgggtatctgaggaggt 378
                | ||||||||| ||||||||| |||||||||
Sbjct: 21096137 gcctctaccttgactgggtatttgaggaggt 21096107



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>dbj|AK100579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105L14, full
            insert sequence
          Length = 3079

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                        
Query: 288  atcttgccaccgacgtcggggaagcattcttggtcgggcagcgggacgatcttaccatca 347
            ||||||||||| ||||| || |||||||| || || ||||  ||  | | |||||| |||
Sbjct: 2748 atcttgccaccaacgtcaggaaagcattcgtgttctggcaatggaccaaccttaccgtca 2689

                                           
Query: 348  ggctctaccttcactgggtatctgaggaggt 378
            | ||||||||| ||||||||| |||||||||
Sbjct: 2688 gcctctaccttgactgggtatttgaggaggt 2658



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>dbj|AK058661.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G04, full
           insert sequence
          Length = 451

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                       
Query: 288 atcttgccaccgacgtcggggaagcattcttggtcgggcagcgggacgatcttaccatca 347
           ||||||||||| ||||| || |||||||| || || ||||  ||  | | |||||| |||
Sbjct: 119 atcttgccaccaacgtcaggaaagcattcgtgttctggcaatggaccaaccttaccgtca 60

                                          
Query: 348 ggctctaccttcactgggtatctgaggaggt 378
           | ||||||||| ||||||||| |||||||||
Sbjct: 59  gcctctaccttgactgggtatttgaggaggt 29



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>dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone: P0478E02
          Length = 140715

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                          
Query: 288    atcttgccaccgacgtcggggaagcattcttggtcgggcagcgggacgatcttaccatca 347
              ||||||||||| ||||| || |||||||| || || ||||  ||  | | |||||| |||
Sbjct: 117497 atcttgccaccaacgtcaggaaagcattcgtgttctggcaatggaccaaccttaccgtca 117438

                                             
Query: 348    ggctctaccttcactgggtatctgaggaggt 378
              | ||||||||| ||||||||| |||||||||
Sbjct: 117437 gcctctaccttgactgggtatttgaggaggt 117407



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>gb|AE009123.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 149
            of 256 of the complete sequence
          Length = 11363

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 319  ggtcgggcagcgggacgatctt 340
            ||||||||||||||||||||||
Sbjct: 7770 ggtcgggcagcgggacgatctt 7749



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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 319     ggtcgggcagcgggacgatctt 340
               ||||||||||||||||||||||
Sbjct: 1653727 ggtcgggcagcgggacgatctt 1653706



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>gb|U40419.2| Caenorhabditis elegans cosmid C27F2, complete sequence
          Length = 40666

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 177  ttcggagaggttttacaggag 197
            |||||||||||||||||||||
Sbjct: 1047 ttcggagaggttttacaggag 1067



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>gb|BC101324.2| Homo sapiens similar to CTAGE6, mRNA (cDNA clone IMAGE:40024903),
           partial cds
          Length = 1638

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 caggttatcatcatccgttg 163
           ||||||||||||||||||||
Sbjct: 229 caggttatcatcatccgttg 210



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>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
             sequence
          Length = 130272

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 290   cttgccaccgacgtcggggaagca 313
             |||||| |||||||||||||||||
Sbjct: 47309 cttgccgccgacgtcggggaagca 47332



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 290      cttgccaccgacgtcggggaagca 313
                |||||| |||||||||||||||||
Sbjct: 35046408 cttgccgccgacgtcggggaagca 35046431



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>gb|AF271358.1| Oryza sativa (indica cultivar-group) phospholipase D (RPLD5) gene,
            complete cds
          Length = 6300

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 290  cttgccaccgacgtcggggaagca 313
            |||||| |||||||||||||||||
Sbjct: 5727 cttgccgccgacgtcggggaagca 5704



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>gb|AC106862.3| Homo sapiens BAC clone RP11-61L23 from 7, complete sequence
          Length = 169723

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   caggttatcatcatccgttg 163
             ||||||||||||||||||||
Sbjct: 55976 caggttatcatcatccgttg 55995



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>gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, complete sequence
          Length = 200123

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    caggttatcatcatccgttg 163
              ||||||||||||||||||||
Sbjct: 122015 caggttatcatcatccgttg 121996



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>gb|AF338232.1| Homo sapiens CTAGE-4 protein mRNA, complete cds
          Length = 1967

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 caggttatcatcatccgttg 163
           ||||||||||||||||||||
Sbjct: 257 caggttatcatcatccgttg 238



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>gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complete sequence
          Length = 130030

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    caggttatcatcatccgttg 163
              ||||||||||||||||||||
Sbjct: 119987 caggttatcatcatccgttg 120006



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   caggttatcatcatccgttg 163
             ||||||||||||||||||||
Sbjct: 35997 caggttatcatcatccgttg 35978



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>gb|BC043153.2| Homo sapiens CTAGE family, member 6, mRNA (cDNA clone MGC:41943
           IMAGE:5296763), complete cds
          Length = 2620

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 caggttatcatcatccgttg 163
           ||||||||||||||||||||
Sbjct: 916 caggttatcatcatccgttg 897



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>ref|NM_001008747.1| Homo sapiens similar to CTAGE6 (LOC441294), mRNA
          Length = 2355

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 144 caggttatcatcatccgttg 163
           ||||||||||||||||||||
Sbjct: 900 caggttatcatcatccgttg 881



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>ref|XM_935638.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC641899), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  caggttatcatcatccgttg 163
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>ref|XM_499498.2| PREDICTED: Homo sapiens CTAGE family, member 6 (CTAGE6), mRNA
          Length = 3172

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  caggttatcatcatccgttg 163
            ||||||||||||||||||||
Sbjct: 1487 caggttatcatcatccgttg 1468



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>ref|XM_936769.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC647707), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  caggttatcatcatccgttg 163
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>ref|XM_496933.2| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC441296), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  caggttatcatcatccgttg 163
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>ref|XM_498461.2| PREDICTED: Homo sapiens CTAGE family, member 6 (CTAGE6), mRNA
          Length = 3172

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  caggttatcatcatccgttg 163
            ||||||||||||||||||||
Sbjct: 1487 caggttatcatcatccgttg 1468



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>ref|XM_928907.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5
            (LOC643854), mRNA
          Length = 4583

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 144  caggttatcatcatccgttg 163
            ||||||||||||||||||||
Sbjct: 2072 caggttatcatcatccgttg 2053



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>gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromosome 7, complete
              sequence
          Length = 162801

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 144    caggttatcatcatccgttg 163
              ||||||||||||||||||||
Sbjct: 114015 caggttatcatcatccgttg 114034



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 290      cttgccaccgacgtcggggaagca 313
                |||||| |||||||||||||||||
Sbjct: 35136480 cttgccgccgacgtcggggaagca 35136503



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>gb|AF289199.1|AF289199 Mus musculus junctin and aspartyl beta-hydroxylase (Asph) genes,
            partial cds
          Length = 12427

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 217  actctgaagagaagtcagta 236
            ||||||||||||||||||||
Sbjct: 5391 actctgaagagaagtcagta 5372



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>dbj|AK069703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027C22, full
            insert sequence
          Length = 2733

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 290  cttgccaccgacgtcggggaagca 313
            |||||| |||||||||||||||||
Sbjct: 2634 cttgccgccgacgtcggggaagca 2611



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>emb|AL135904.11| Human DNA sequence from clone RP5-1005H11 on chromosome 6 Contains part
             of the gene for a 7 transmembrane receptor (rhodopsin
             family) (olfactory receptor like) protein, the gene for
             WUGSC:H_DJ0988G15.3 protein, part of the PDNP3
             (phosphodiesterase I/nucleotide pyrophosphatase 3) gene,
             ESTs, STSs and GSSs, complete sequence
          Length = 59130

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   caggttatcatcatccgttg 163
             ||||||||||||||||||||
Sbjct: 31234 caggttatcatcatccgttg 31253



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>emb|AL773548.10| Mouse DNA sequence from clone RP23-70D2 on chromosome 4, complete
             sequence
          Length = 198991

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   actctgaagagaagtcagta 236
             ||||||||||||||||||||
Sbjct: 29581 actctgaagagaagtcagta 29600



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>gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complete sequence
          Length = 140915

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   caggttatcatcatccgttg 163
             ||||||||||||||||||||
Sbjct: 92861 caggttatcatcatccgttg 92842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,187,677
Number of Sequences: 3902068
Number of extensions: 2187677
Number of successful extensions: 47507
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 47465
Number of HSP's gapped (non-prelim): 47
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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