Clone Name | rbastl23c01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_450186.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2532 Score = 54.0 bits (27), Expect = 3e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 288 atcttgccaccgacgtcggggaagcattcttggtcgggcagcgggacgatcttaccatca 347 ||||||||||| ||||| || |||||||| || || |||| || | | |||||| ||| Sbjct: 2489 atcttgccaccaacgtcaggaaagcattcgtgttctggcaatggaccaaccttaccgtca 2430 Query: 348 ggctctaccttcactgggtatctgaggaggt 378 | ||||||||| ||||||||| ||||||||| Sbjct: 2429 gcctctaccttgactgggtatttgaggaggt 2399
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 3e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 288 atcttgccaccgacgtcggggaagcattcttggtcgggcagcgggacgatcttaccatca 347 ||||||||||| ||||| || |||||||| || || |||| || | | |||||| ||| Sbjct: 21096197 atcttgccaccaacgtcaggaaagcattcgtgttctggcaatggaccaaccttaccgtca 21096138 Query: 348 ggctctaccttcactgggtatctgaggaggt 378 | ||||||||| ||||||||| ||||||||| Sbjct: 21096137 gcctctaccttgactgggtatttgaggaggt 21096107
>dbj|AK100579.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105L14, full insert sequence Length = 3079 Score = 54.0 bits (27), Expect = 3e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 288 atcttgccaccgacgtcggggaagcattcttggtcgggcagcgggacgatcttaccatca 347 ||||||||||| ||||| || |||||||| || || |||| || | | |||||| ||| Sbjct: 2748 atcttgccaccaacgtcaggaaagcattcgtgttctggcaatggaccaaccttaccgtca 2689 Query: 348 ggctctaccttcactgggtatctgaggaggt 378 | ||||||||| ||||||||| ||||||||| Sbjct: 2688 gcctctaccttgactgggtatttgaggaggt 2658
>dbj|AK058661.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G04, full insert sequence Length = 451 Score = 54.0 bits (27), Expect = 3e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 288 atcttgccaccgacgtcggggaagcattcttggtcgggcagcgggacgatcttaccatca 347 ||||||||||| ||||| || |||||||| || || |||| || | | |||||| ||| Sbjct: 119 atcttgccaccaacgtcaggaaagcattcgtgttctggcaatggaccaaccttaccgtca 60 Query: 348 ggctctaccttcactgggtatctgaggaggt 378 | ||||||||| ||||||||| ||||||||| Sbjct: 59 gcctctaccttgactgggtatttgaggaggt 29
>dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone: P0478E02 Length = 140715 Score = 54.0 bits (27), Expect = 3e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 288 atcttgccaccgacgtcggggaagcattcttggtcgggcagcgggacgatcttaccatca 347 ||||||||||| ||||| || |||||||| || || |||| || | | |||||| ||| Sbjct: 117497 atcttgccaccaacgtcaggaaagcattcgtgttctggcaatggaccaaccttaccgtca 117438 Query: 348 ggctctaccttcactgggtatctgaggaggt 378 | ||||||||| ||||||||| ||||||||| Sbjct: 117437 gcctctaccttgactgggtatttgaggaggt 117407
>gb|AE009123.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 149 of 256 of the complete sequence Length = 11363 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 319 ggtcgggcagcgggacgatctt 340 |||||||||||||||||||||| Sbjct: 7770 ggtcgggcagcgggacgatctt 7749
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Minus Query: 319 ggtcgggcagcgggacgatctt 340 |||||||||||||||||||||| Sbjct: 1653727 ggtcgggcagcgggacgatctt 1653706
>gb|U40419.2| Caenorhabditis elegans cosmid C27F2, complete sequence Length = 40666 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 ttcggagaggttttacaggag 197 ||||||||||||||||||||| Sbjct: 1047 ttcggagaggttttacaggag 1067
>gb|BC101324.2| Homo sapiens similar to CTAGE6, mRNA (cDNA clone IMAGE:40024903), partial cds Length = 1638 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 229 caggttatcatcatccgttg 210
>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete sequence Length = 130272 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 cttgccaccgacgtcggggaagca 313 |||||| ||||||||||||||||| Sbjct: 47309 cttgccgccgacgtcggggaagca 47332
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 cttgccaccgacgtcggggaagca 313 |||||| ||||||||||||||||| Sbjct: 35046408 cttgccgccgacgtcggggaagca 35046431
>gb|AF271358.1| Oryza sativa (indica cultivar-group) phospholipase D (RPLD5) gene, complete cds Length = 6300 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 cttgccaccgacgtcggggaagca 313 |||||| ||||||||||||||||| Sbjct: 5727 cttgccgccgacgtcggggaagca 5704
>gb|AC106862.3| Homo sapiens BAC clone RP11-61L23 from 7, complete sequence Length = 169723 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 55976 caggttatcatcatccgttg 55995
>gb|AC073264.5| Homo sapiens BAC clone RP11-298A10 from 7, complete sequence Length = 200123 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 122015 caggttatcatcatccgttg 121996
>gb|AF338232.1| Homo sapiens CTAGE-4 protein mRNA, complete cds Length = 1967 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 257 caggttatcatcatccgttg 238
>gb|AC004889.1| Homo sapiens PAC clone RP4-798C17 from 7, complete sequence Length = 130030 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 119987 caggttatcatcatccgttg 120006 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 35997 caggttatcatcatccgttg 35978
>gb|BC043153.2| Homo sapiens CTAGE family, member 6, mRNA (cDNA clone MGC:41943 IMAGE:5296763), complete cds Length = 2620 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 916 caggttatcatcatccgttg 897
>ref|NM_001008747.1| Homo sapiens similar to CTAGE6 (LOC441294), mRNA Length = 2355 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 900 caggttatcatcatccgttg 881
>ref|XM_935638.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5 (LOC641899), mRNA Length = 4583 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 2072 caggttatcatcatccgttg 2053
>ref|XM_499498.2| PREDICTED: Homo sapiens CTAGE family, member 6 (CTAGE6), mRNA Length = 3172 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 1487 caggttatcatcatccgttg 1468
>ref|XM_936769.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5 (LOC647707), mRNA Length = 4583 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 2072 caggttatcatcatccgttg 2053
>ref|XM_496933.2| PREDICTED: Homo sapiens similar to CTAGE family, member 5 (LOC441296), mRNA Length = 4583 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 2072 caggttatcatcatccgttg 2053
>ref|XM_498461.2| PREDICTED: Homo sapiens CTAGE family, member 6 (CTAGE6), mRNA Length = 3172 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 1487 caggttatcatcatccgttg 1468
>ref|XM_928907.1| PREDICTED: Homo sapiens similar to CTAGE family, member 5 (LOC643854), mRNA Length = 4583 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 2072 caggttatcatcatccgttg 2053
>gb|AC148828.2| Pan troglodytes BAC clone CH251-136M2 from chromosome 7, complete sequence Length = 162801 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 114015 caggttatcatcatccgttg 114034
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 290 cttgccaccgacgtcggggaagca 313 |||||| ||||||||||||||||| Sbjct: 35136480 cttgccgccgacgtcggggaagca 35136503
>gb|AF289199.1|AF289199 Mus musculus junctin and aspartyl beta-hydroxylase (Asph) genes, partial cds Length = 12427 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 actctgaagagaagtcagta 236 |||||||||||||||||||| Sbjct: 5391 actctgaagagaagtcagta 5372
>dbj|AK069703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027C22, full insert sequence Length = 2733 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 290 cttgccaccgacgtcggggaagca 313 |||||| ||||||||||||||||| Sbjct: 2634 cttgccgccgacgtcggggaagca 2611
>emb|AL135904.11| Human DNA sequence from clone RP5-1005H11 on chromosome 6 Contains part of the gene for a 7 transmembrane receptor (rhodopsin family) (olfactory receptor like) protein, the gene for WUGSC:H_DJ0988G15.3 protein, part of the PDNP3 (phosphodiesterase I/nucleotide pyrophosphatase 3) gene, ESTs, STSs and GSSs, complete sequence Length = 59130 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 31234 caggttatcatcatccgttg 31253
>emb|AL773548.10| Mouse DNA sequence from clone RP23-70D2 on chromosome 4, complete sequence Length = 198991 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 actctgaagagaagtcagta 236 |||||||||||||||||||| Sbjct: 29581 actctgaagagaagtcagta 29600
>gb|AC005587.1| Homo sapiens PAC clone RP5-988G15 from 6, complete sequence Length = 140915 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 caggttatcatcatccgttg 163 |||||||||||||||||||| Sbjct: 92861 caggttatcatcatccgttg 92842 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,187,677 Number of Sequences: 3902068 Number of extensions: 2187677 Number of successful extensions: 47507 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 47465 Number of HSP's gapped (non-prelim): 47 length of query: 378 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 356 effective length of database: 17,147,199,772 effective search space: 6104403118832 effective search space used: 6104403118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)