ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl23b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete se... 40 3.4
2emb|AJ299436.2|LRU299436 Lumbricus rubellus mt2C gene for metall... 40 3.4
3gb|AC092355.2| Homo sapiens chromosome 7 clone RP11-310D24, comp... 40 3.4
4gb|AC108146.3| Homo sapiens BAC clone RP11-437H3 from 2, complet... 40 3.4
5gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequ... 40 3.4
6gb|AC171176.1| Mus musculus chromosome 3, clone wi1-2063J20, com... 40 3.4

>gb|AF099917.1| Caenorhabditis elegans cosmid F54D10, complete sequence
          Length = 32563

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   gcaacggaaaaggctacaaa 84
            ||||||||||||||||||||
Sbjct: 5041 gcaacggaaaaggctacaaa 5060



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>emb|AJ299436.2|LRU299436 Lumbricus rubellus mt2C gene for metallothionein 2C, exons 1-4
          Length = 9629

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 49   aaacacagacatacaggcaa 68
            ||||||||||||||||||||
Sbjct: 7720 aaacacagacatacaggcaa 7701



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>gb|AC092355.2| Homo sapiens chromosome 7 clone RP11-310D24, complete sequence
          Length = 91792

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    aaaacacagacatacaggca 67
             ||||||||||||||||||||
Sbjct: 76720 aaaacacagacatacaggca 76701



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>gb|AC108146.3| Homo sapiens BAC clone RP11-437H3 from 2, complete sequence
          Length = 91810

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aaaacacagacatacaggca 67
             ||||||||||||||||||||
Sbjct: 38386 aaaacacagacatacaggca 38405



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>gb|AC158470.1| Postia placenta clone JGIACWS-5E10, complete sequence
          Length = 33410

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 70   ggaaaaggctacaaacaacg 89
            ||||||||||||||||||||
Sbjct: 4549 ggaaaaggctacaaacaacg 4530



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>gb|AC171176.1| Mus musculus chromosome 3, clone wi1-2063J20, complete sequence
          Length = 40189

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    accatcctaaaacacagaca 59
             ||||||||||||||||||||
Sbjct: 12200 accatcctaaaacacagaca 12181


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,913,284
Number of Sequences: 3902068
Number of extensions: 1913284
Number of successful extensions: 33670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33664
Number of HSP's gapped (non-prelim): 6
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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