ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl23b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL032658.1|CEY76A2B Caenorhabditis elegans YAC Y76A2B, compl... 40 1.2
2gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome 3R, r... 40 1.2
3gb|AC007804.6|AC007804 Drosophila melanogaster, chromosome 3R, r... 40 1.2
4gb|AC087077.1|AC087077 Caenorhabditis briggsae cosmid CB037G05, ... 40 1.2
5gb|AF155197.1|AF155197 Acetivibrio cellulolyticus cellulosomal s... 40 1.2
6gb|AE003717.2| Drosophila melanogaster chromosome 3R, section 55... 40 1.2
7gb|AY935499.2| Newcastle disease virus isolate I-2, complete genome 38 4.6
8gb|AY935500.1| Newcastle disease virus isolate I-2progenitor, co... 38 4.6
9emb|CR792443.13| Zebrafish DNA sequence from clone DKEY-52K1 in ... 38 4.6
10gb|AC123553.4| Mus musculus BAC clone RP24-566O21 from chromosom... 38 4.6
11emb|CR925757.8| Zebrafish DNA sequence from clone CH211-208H16 i... 38 4.6
12emb|CR759927.12| Zebrafish DNA sequence from clone CH211-196C10 ... 38 4.6
13gb|AC096887.2| Homo sapiens chromosome 3 clone RP11-5O17, comple... 38 4.6
14gb|AC021070.24| Homo sapiens 12 BAC RP11-460N10 (Roswell Park Ca... 38 4.6
15gb|AC092185.3| Homo sapiens 3q BAC RP11-148O7 (Roswell Park Canc... 38 4.6
16gb|AY935498.1| Newcastle disease virus isolate 99-1435, complete... 38 4.6
17gb|AY935497.1| Newcastle disease virus isolate 99-1997PR-32, com... 38 4.6
18gb|AY935496.1| Newcastle disease virus isolate 99-0868lo, comple... 38 4.6
19gb|AY935495.1| Newcastle disease virus isolate 99-0868hi, comple... 38 4.6
20gb|AY935494.1| Newcastle disease virus isolate 99-0655, complete... 38 4.6
21gb|AY935493.1| Newcastle disease virus isolate 98-1252, complete... 38 4.6
22gb|AY935492.1| Newcastle disease virus isolate 98-1249, complete... 38 4.6
23gb|AY935491.1| Newcastle disease virus isolate 98-1154, complete... 38 4.6
24gb|AY935490.1| Newcastle disease virus isolate 02-1334, complete... 38 4.6
25gb|AY935489.1| Newcastle disease virus isolate 01-1108, complete... 38 4.6
26gb|AC153363.4| Mus musculus BAC clone RP23-5I6 from chromosome 9... 38 4.6
27emb|BX537291.11| Zebrafish DNA sequence from clone DKEY-127K10 i... 38 4.6
28emb|BX548026.10| Zebrafish DNA sequence from clone CH211-193D9, ... 38 4.6
29dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
30gb|AC017101.10| Homo sapiens BAC clone RP11-556A11 from 2, compl... 38 4.6
31gb|AF138897.1|AF138897 Newcastle disease virus isolate Queenslan... 38 4.6
32gb|AC092455.4| Homo sapiens BAC clone CTD-2017A21 from 2, comple... 38 4.6
33dbj|AP005491.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
34emb|X04274.2|PANDV3E Newcastle disease virus genome (strain D26)... 38 4.6
35dbj|AP004553.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
36emb|AL929032.10| Zebrafish DNA sequence from clone DKEY-4C23 in ... 38 4.6
37emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 ... 38 4.6
38dbj|AP001893.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 4.6
39emb|AL929542.9| Zebrafish DNA sequence from clone CH211-159O22, ... 38 4.6
40gb|AC126669.4| Mus musculus BAC clone RP24-457D15 from 9, comple... 38 4.6
41gb|AC140369.2| Mus musculus BAC clone RP23-200L3 from 3, complet... 38 4.6
42dbj|AP000717.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 38 4.6 
>emb|AL032658.1|CEY76A2B Caenorhabditis elegans YAC Y76A2B, complete sequence
          Length = 35870

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    aaaattgtaaactaaccaaa 91
             ||||||||||||||||||||
Sbjct: 25639 aaaattgtaaactaaccaaa 25658
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>gb|AC011763.6|AC011763 Drosophila melanogaster, chromosome 3R, region 90A-90A, BAC clone
              BACR48C05, complete sequence
          Length = 164450

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     cccaaaacacattctcacac 56
              ||||||||||||||||||||
Sbjct: 150557 cccaaaacacattctcacac 150576
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>gb|AC007804.6|AC007804 Drosophila melanogaster, chromosome 3R, region 90A-90B, BAC clone
           BACR29H07, complete sequence
          Length = 175440

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  cccaaaacacattctcacac 56
           ||||||||||||||||||||
Sbjct: 517 cccaaaacacattctcacac 536
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>gb|AC087077.1|AC087077 Caenorhabditis briggsae cosmid CB037G05, complete sequence
          Length = 67367

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    taaaattgtaaactaaccaa 90
             ||||||||||||||||||||
Sbjct: 25612 taaaattgtaaactaaccaa 25631
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>gb|AF155197.1|AF155197 Acetivibrio cellulolyticus cellulosomal scaffoldin precursor (cipV)
            gene, complete cds
          Length = 6555

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   acaagtcatctaatgctaaa 74
            ||||||||||||||||||||
Sbjct: 1970 acaagtcatctaatgctaaa 1989
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>gb|AE003717.2| Drosophila melanogaster chromosome 3R, section 55 of 118 of the complete
              sequence
          Length = 217725

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     cccaaaacacattctcacac 56
              ||||||||||||||||||||
Sbjct: 132268 cccaaaacacattctcacac 132287
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>gb|AY935499.2| Newcastle disease virus isolate I-2, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>gb|AY935500.1| Newcastle disease virus isolate I-2progenitor, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>emb|CR792443.13| Zebrafish DNA sequence from clone DKEY-52K1 in linkage group 13, complete
              sequence
          Length = 217981

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     taaccaaaaaatgtatgac 102
              |||||||||||||||||||
Sbjct: 197110 taaccaaaaaatgtatgac 197092
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>gb|AC123553.4| Mus musculus BAC clone RP24-566O21 from chromosome 3, complete sequence
          Length = 138553

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    caaaacacattctcacaca 57
             |||||||||||||||||||
Sbjct: 22502 caaaacacattctcacaca 22484
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>emb|CR925757.8| Zebrafish DNA sequence from clone CH211-208H16 in linkage group 5,
              complete sequence
          Length = 154617

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     gaatcgcaaatgcccaaaa 43
              |||||||||||||||||||
Sbjct: 134471 gaatcgcaaatgcccaaaa 134489
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>emb|CR759927.12| Zebrafish DNA sequence from clone CH211-196C10 in linkage group 8,
              complete sequence
          Length = 205716

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 84     taaccaaaaaatgtatgac 102
              |||||||||||||||||||
Sbjct: 122730 taaccaaaaaatgtatgac 122748
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>gb|AC096887.2| Homo sapiens chromosome 3 clone RP11-5O17, complete sequence
          Length = 171289

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    aaaacacattctcacacaa 58
             |||||||||||||||||||
Sbjct: 87075 aaaacacattctcacacaa 87093
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>gb|AC021070.24| Homo sapiens 12 BAC RP11-460N10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 162978

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 84    taaccaaaaaatgtatgac 102
             |||||||||||||||||||
Sbjct: 66222 taaccaaaaaatgtatgac 66204
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>gb|AC092185.3| Homo sapiens 3q BAC RP11-148O7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 165962

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    tgctaaaattgtaaactaa 86
             |||||||||||||||||||
Sbjct: 41358 tgctaaaattgtaaactaa 41340
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>gb|AY935498.1| Newcastle disease virus isolate 99-1435, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>gb|AY935497.1| Newcastle disease virus isolate 99-1997PR-32, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>gb|AY935496.1| Newcastle disease virus isolate 99-0868lo, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>gb|AY935495.1| Newcastle disease virus isolate 99-0868hi, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>gb|AY935494.1| Newcastle disease virus isolate 99-0655, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>gb|AY935493.1| Newcastle disease virus isolate 98-1252, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>gb|AY935492.1| Newcastle disease virus isolate 98-1249, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>gb|AY935491.1| Newcastle disease virus isolate 98-1154, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>gb|AY935490.1| Newcastle disease virus isolate 02-1334, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>gb|AY935489.1| Newcastle disease virus isolate 01-1108, complete genome
          Length = 15186

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>gb|AC153363.4| Mus musculus BAC clone RP23-5I6 from chromosome 9, complete sequence
          Length = 185444

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 74    aattgtaaactaaccaaaa 92
             |||||||||||||||||||
Sbjct: 85551 aattgtaaactaaccaaaa 85533
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>emb|BX537291.11| Zebrafish DNA sequence from clone DKEY-127K10 in linkage group 11,
              complete sequence
          Length = 163774

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     caaaacacattctcacaca 57
              |||||||||||||||||||
Sbjct: 131158 caaaacacattctcacaca 131176
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>emb|BX548026.10| Zebrafish DNA sequence from clone CH211-193D9, complete sequence
          Length = 147902

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     aaactaaccaaaaaatgta 98
              |||||||||||||||||||
Sbjct: 100875 aaactaaccaaaaaatgta 100857
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 72       aaaattgtaaactaaccaaaaaa 94
                ||||||||||| |||||||||||
Sbjct: 15329287 aaaattgtaaattaaccaaaaaa 15329265
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>gb|AC017101.10| Homo sapiens BAC clone RP11-556A11 from 2, complete sequence
          Length = 195635

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 62     atctaatgctaaaattgtaaact 84
              |||||||||| ||||||||||||
Sbjct: 141066 atctaatgctgaaattgtaaact 141088
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>gb|AF138897.1|AF138897 Newcastle disease virus isolate Queensland V4/66 phosphoprotein
           gene, complete cds
          Length = 1420

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 57  aagtcatctaatgctaaaa 75
           |||||||||||||||||||
Sbjct: 462 aagtcatctaatgctaaaa 480
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>gb|AC092455.4| Homo sapiens BAC clone CTD-2017A21 from 2, complete sequence
          Length = 110837

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 77    tgtaaactaaccaaaaaatgtat 99
             |||||||||||||||||| ||||
Sbjct: 20788 tgtaaactaaccaaaaaaagtat 20766
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>dbj|AP005491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0062G05
          Length = 152802

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 72     aaaattgtaaactaaccaaaaaa 94
              ||||||||||| |||||||||||
Sbjct: 114918 aaaattgtaaattaaccaaaaaa 114896
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>emb|X04274.2|PANDV3E Newcastle disease virus genome (strain D26) 3' end (2.6 kb)
          Length = 2617

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 57   aagtcatctaatgctaaaa 75
            |||||||||||||||||||
Sbjct: 2265 aagtcatctaatgctaaaa 2283
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>dbj|AP004553.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1790_D02
          Length = 162928

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 72    aaaattgtaaactaaccaaaaaa 94
             ||||||||||| |||||||||||
Sbjct: 14863 aaaattgtaaattaaccaaaaaa 14841
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>emb|AL929032.10| Zebrafish DNA sequence from clone DKEY-4C23 in linkage group 22, complete
              sequence
          Length = 236775

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 84     taaccaaaaaatgtatgac 102
              |||||||||||||||||||
Sbjct: 139421 taaccaaaaaatgtatgac 139403
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>emb|BX950199.14| Zebrafish DNA sequence from clone CH211-215A11 in linkage group 24,
             complete sequence
          Length = 213091

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 43    acacattctcacacaagtcatct 65
             ||||| |||||||||||||||||
Sbjct: 36708 acacactctcacacaagtcatct 36730
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>dbj|AP001893.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-50B3, complete
              sequence
          Length = 157702

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 44     cacattctcacacaagtca 62
              |||||||||||||||||||
Sbjct: 140681 cacattctcacacaagtca 140699
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>emb|AL929542.9| Zebrafish DNA sequence from clone CH211-159O22, complete sequence
          Length = 80581

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 84   taaccaaaaaatgtatgac 102
            |||||||||||||||||||
Sbjct: 8886 taaccaaaaaatgtatgac 8904
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>gb|AC126669.4| Mus musculus BAC clone RP24-457D15 from 9, complete sequence
          Length = 180081

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 74   aattgtaaactaaccaaaa 92
            |||||||||||||||||||
Sbjct: 6631 aattgtaaactaaccaaaa 6613
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>gb|AC140369.2| Mus musculus BAC clone RP23-200L3 from 3, complete sequence
          Length = 191613

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    caaaacacattctcacaca 57
             |||||||||||||||||||
Sbjct: 42029 caaaacacattctcacaca 42047
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>dbj|AP000717.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-75M6, complete
            sequence
          Length = 29161

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 44   cacattctcacacaagtca 62
            |||||||||||||||||||
Sbjct: 3808 cacattctcacacaagtca 3826


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,233,084
Number of Sequences: 3902068
Number of extensions: 1233084
Number of successful extensions: 80974
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80888
Number of HSP's gapped (non-prelim): 86
length of query: 103
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 82
effective length of database: 17,151,101,840
effective search space: 1406390350880
effective search space used: 1406390350880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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