ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl23b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AEF1_DROME (P39413) Adult enhancer factor 1 (AEF-1) 30 2.3
2DHET_GLUOX (O05542) Alcohol dehydrogenase [acceptor] precursor (... 28 6.5
3VG10_BPB03 (Q37891) Upper collar protein (Connector protein) (La... 28 8.6

>AEF1_DROME (P39413) Adult enhancer factor 1 (AEF-1)|
          Length = 308

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 10  TQIDENCTSLIANARPKTKEDIFQHICTDNNH*GVL*G-HPGYNPATQKLQEQMNHRRRR 186
           T +  NC  +I  A+P+T       I  +NN+  V    HP +  A Q+ Q+Q   ++++
Sbjct: 15  TAMSSNCDIVIVAAQPQTT------IANNNNNETVTQATHPAHMAAVQQQQQQQQQQQQQ 68

Query: 187 QH 192
            H
Sbjct: 69  HH 70



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>DHET_GLUOX (O05542) Alcohol dehydrogenase [acceptor] precursor (EC 1.1.99.8)|
           (G3-ADH subunit I)
          Length = 757

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -2

Query: 160 LVTFALRGYIRDAPITLPSDYYQYICV-----GIYPLLFWAERLQSSWYSSH 20
           L +F  +  I   P+T  ++  QY+ V     GIYP L+      S W  +H
Sbjct: 555 LYSFPAQSAIIAPPVTYTANGKQYVAVEVGWGGIYPFLYGGVARTSGWTVNH 606



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>VG10_BPB03 (Q37891) Upper collar protein (Connector protein) (Late protein|
           GP10)
          Length = 308

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 100 YYQYICVGIYPLLFWAERLQSSWYSSHQSEFIH 2
           YYQY+C   Y L  W ERL  S   S+  + IH
Sbjct: 26  YYQYLCSLAYQLFEW-ERLPPSVDPSYLEKSIH 57


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,432,630
Number of Sequences: 219361
Number of extensions: 567313
Number of successful extensions: 1466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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