ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl23b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197073.1| Oryza sativa (japonica cultivar-group) hypothet... 56 9e-05
2gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 gen... 56 9e-05
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
4dbj|AK101467.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
5dbj|AK063971.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 56 9e-05
7emb|CR388019.9| Zebrafish DNA sequence from clone DKEY-71D15 in ... 46 0.084
8gb|AC166325.1| Mus musculus BAC clone RP24-421O23 from chromosom... 42 1.3
9gb|AC154603.3| Mus musculus BAC clone RP23-344D21 from chromosom... 42 1.3
10gb|AC114512.5| Rattus norvegicus 5 BAC CH230-5N9 (Children's Hos... 40 5.2
11gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, com... 40 5.2
12gb|AC100740.8| Mus musculus chromosome 1, clone RP24-421N21, com... 40 5.2
13gb|AC120856.6| Mus musculus chromosome 1, clone RP23-284B21, com... 40 5.2
14gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, co... 40 5.2
15gb|AC158754.4| Mus musculus chromosome 5, clone RP24-167K16, com... 40 5.2
16gb|AC157795.4| Mus musculus chromosome 1, clone RP24-122B24, com... 40 5.2
17dbj|AK158973.1| Mus musculus visual cortex cDNA, RIKEN full-leng... 40 5.2
18gb|AC166124.4| Mus musculus chromosome 1, clone RP23-105N9, comp... 40 5.2 
>ref|NM_197073.1| Oryza sativa (japonica cultivar-group) hypothetical protein
            (OSJNBa0029C15.25), mRNA
          Length = 3759

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  tgccatgctccttcagatagctcatcaaacagttggctgtagccccgaccagcgtagcca 334
            ||||| |||||||||||||| |||||||| ||||| |||||  |||     | | | |||
Sbjct: 3713 tgccaagctccttcagatagttcatcaaatagttgactgtattcccagttcgagaaccca 3654

                                            
Query: 335  aggaaaaaccacaggtcctcggcagattgctc 366
            |||||||||||||||| ||| |||||||||||
Sbjct: 3653 aggaaaaaccacaggttctcagcagattgctc 3622
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>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
              sequence
          Length = 148816

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                          
Query: 275    tgccatgctccttcagatagctcatcaaacagttggctgtagccccgaccagcgtagcca 334
              ||||| |||||||||||||| |||||||| ||||| |||||  |||     | | | |||
Sbjct: 114020 tgccaagctccttcagatagttcatcaaatagttgactgtattcccagttcgagaaccca 113961

                                              
Query: 335    aggaaaaaccacaggtcctcggcagattgctc 366
              |||||||||||||||| ||| |||||||||||
Sbjct: 113960 aggaaaaaccacaggttctcagcagattgctc 113929
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                            
Query: 275      tgccatgctccttcagatagctcatcaaacagttggctgtagccccgaccagcgtagcca 334
                ||||| |||||||||||||| |||||||| ||||| |||||  |||     | | | |||
Sbjct: 17818021 tgccaagctccttcagatagttcatcaaatagttgactgtattcccagttcgagaaccca 17818080

                                                
Query: 335      aggaaaaaccacaggtcctcggcagattgctc 366
                |||||||||||||||| ||| |||||||||||
Sbjct: 17818081 aggaaaaaccacaggttctcagcagattgctc 17818112
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>dbj|AK101467.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040I16, full
            insert sequence
          Length = 2109

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  tgccatgctccttcagatagctcatcaaacagttggctgtagccccgaccagcgtagcca 334
            ||||| |||||||||||||| |||||||| ||||| |||||  |||     | | | |||
Sbjct: 1842 tgccaagctccttcagatagttcatcaaatagttgactgtattcccagttcgagaaccca 1783

                                            
Query: 335  aggaaaaaccacaggtcctcggcagattgctc 366
            |||||||||||||||| ||| |||||||||||
Sbjct: 1782 aggaaaaaccacaggttctcagcagattgctc 1751
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>dbj|AK063971.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B05, full
            insert sequence
          Length = 2861

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 275  tgccatgctccttcagatagctcatcaaacagttggctgtagccccgaccagcgtagcca 334
            ||||| |||||||||||||| |||||||| ||||| |||||  |||     | | | |||
Sbjct: 2523 tgccaagctccttcagatagttcatcaaatagttgactgtattcccagttcgagaaccca 2464

                                            
Query: 335  aggaaaaaccacaggtcctcggcagattgctc 366
            |||||||||||||||| ||| |||||||||||
Sbjct: 2463 aggaaaaaccacaggttctcagcagattgctc 2432
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                            
Query: 275      tgccatgctccttcagatagctcatcaaacagttggctgtagccccgaccagcgtagcca 334
                ||||| |||||||||||||| |||||||| ||||| |||||  |||     | | | |||
Sbjct: 17827274 tgccaagctccttcagatagttcatcaaatagttgactgtattcccagttcgagaaccca 17827333

                                                
Query: 335      aggaaaaaccacaggtcctcggcagattgctc 366
                |||||||||||||||| ||| |||||||||||
Sbjct: 17827334 aggaaaaaccacaggttctcagcagattgctc 17827365
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>emb|CR388019.9| Zebrafish DNA sequence from clone DKEY-71D15 in linkage group 21,
             complete sequence
          Length = 68996

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 34    atctgtgcaccaaaatgtgccaa 56
             |||||||||||||||||||||||
Sbjct: 42900 atctgtgcaccaaaatgtgccaa 42878
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>gb|AC166325.1| Mus musculus BAC clone RP24-421O23 from chromosome 13, complete
             sequence
          Length = 192167

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 147   aaacacaatgttaccaccatg 167
             |||||||||||||||||||||
Sbjct: 56882 aaacacaatgttaccaccatg 56902
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>gb|AC154603.3| Mus musculus BAC clone RP23-344D21 from chromosome 13, complete
            sequence
          Length = 216297

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 147  aaacacaatgttaccaccatg 167
            |||||||||||||||||||||
Sbjct: 2001 aaacacaatgttaccaccatg 1981
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>gb|AC114512.5| Rattus norvegicus 5 BAC CH230-5N9 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 247588

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     tctgtgcaccaaaatgtgcc 54
              ||||||||||||||||||||
Sbjct: 108417 tctgtgcaccaaaatgtgcc 108398
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>gb|AC114649.9| Mus musculus chromosome 5, clone RP24-150M14, complete sequence
          Length = 154765

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 285    cttcagatagctcatcaaac 304
              ||||||||||||||||||||
Sbjct: 142669 cttcagatagctcatcaaac 142688
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>gb|AC100740.8| Mus musculus chromosome 1, clone RP24-421N21, complete sequence
          Length = 146835

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   ttcagatcagaacaacctgt 82
            ||||||||||||||||||||
Sbjct: 9385 ttcagatcagaacaacctgt 9366
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>gb|AC120856.6| Mus musculus chromosome 1, clone RP23-284B21, complete sequence
          Length = 261249

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     aactaattcagatcagaaca 76
              ||||||||||||||||||||
Sbjct: 224434 aactaattcagatcagaaca 224415
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>gb|AC113299.14| Mus musculus chromosome 5, clone RP23-429P17, complete sequence
          Length = 214124

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   cactaacatgccatgctcct 286
             ||||||||||||||||||||
Sbjct: 51364 cactaacatgccatgctcct 51383
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>gb|AC158754.4| Mus musculus chromosome 5, clone RP24-167K16, complete sequence
          Length = 131339

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  cttcagatagctcatcaaac 304
            ||||||||||||||||||||
Sbjct: 3714 cttcagatagctcatcaaac 3733
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>gb|AC157795.4| Mus musculus chromosome 1, clone RP24-122B24, complete sequence
          Length = 158636

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    aactaattcagatcagaaca 76
             ||||||||||||||||||||
Sbjct: 66263 aactaattcagatcagaaca 66244
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>dbj|AK158973.1| Mus musculus visual cortex cDNA, RIKEN full-length enriched library,
            clone:K530022E24 product:unclassifiable, full insert
            sequence
          Length = 3492

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 267  cactaacatgccatgctcct 286
            ||||||||||||||||||||
Sbjct: 1030 cactaacatgccatgctcct 1049
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>gb|AC166124.4| Mus musculus chromosome 1, clone RP23-105N9, complete sequence
          Length = 226615

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     ttcagatcagaacaacctgt 82
              ||||||||||||||||||||
Sbjct: 111639 ttcagatcagaacaacctgt 111620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,993,701
Number of Sequences: 3902068
Number of extensions: 2993701
Number of successful extensions: 47549
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47473
Number of HSP's gapped (non-prelim): 76
length of query: 387
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 365
effective length of database: 17,147,199,772
effective search space: 6258727916780
effective search space used: 6258727916780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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