ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
2dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic D... 76 8e-11
3dbj|AK072094.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 8e-11
4dbj|AK072085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 8e-11
5gb|AC068919.4| Homo sapiens BAC clone RP11-340I19 from 2, comple... 44 0.28
6ref|XM_463462.1| Oryza sativa (japonica cultivar-group), predic... 42 1.1
7emb|AL732598.10| Zebrafish DNA sequence from clone CH211-10E8 in... 42 1.1
8emb|CT030648.7| Mouse DNA sequence from clone RP24-440M15 on chr... 42 1.1
9gb|AC161807.12| Mus musculus chromosome 1, clone RP24-229G16, co... 40 4.4
10gb|AC026130.15| Homo sapiens chromosome 17, clone RP11-801J18, c... 40 4.4
11gb|AC025518.8| Homo sapiens chromosome 17, clone RP11-713H12, co... 40 4.4
12gb|AC098870.3| Homo sapiens BAC clone RP11-651C19 from 4, comple... 40 4.4
13gb|AC016575.7| Homo sapiens chromosome 5 clone CTB-40H15, comple... 40 4.4
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
15gb|AC097108.5| Homo sapiens BAC clone RP11-745K4 from 4, complet... 40 4.4
16dbj|AP004158.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
17emb|CR377211.7| Zebrafish DNA sequence from clone DKEYP-13A3 in ... 40 4.4 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 69/78 (88%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                            
Query: 147      accacaatgacacctttcaactacaaaatcttaacacctgtacaaactaaaagcactagg 206
                ||||||||| ||||||| ||||||||||||| | ||||||||||||||| || |||||| 
Sbjct: 32993597 accacaatgccaccttt-aactacaaaatctgagcacctgtacaaactagaaacactaga 32993655

                                  
Query: 207      cccctacagaaatgctat 224
                | |||| |||||||||||
Sbjct: 32993656 cgcctagagaaatgctat 32993673



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 64/72 (88%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                            
Query: 264      ttacaccattccatgagcaaaattgtgttccatctcaggaggtgatgctaaaccataaac 323
                ||||||||| ||| |||||||||||||| | ||||||||| |  ||||||||||||||||
Sbjct: 32993706 ttacaccatcccacgagcaaaattgtgtccaatctcagga-gaaatgctaaaccataaac 32993764

                            
Query: 324      aaataattcaag 335
                ||||| ||||||
Sbjct: 32993765 aaatagttcaag 32993776
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>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0010B10
          Length = 155263

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 69/78 (88%), Gaps = 1/78 (1%)
 Strand = Plus / Plus

                                                                         
Query: 147   accacaatgacacctttcaactacaaaatcttaacacctgtacaaactaaaagcactagg 206
             ||||||||| ||||||| ||||||||||||| | ||||||||||||||| || |||||| 
Sbjct: 59825 accacaatgccaccttt-aactacaaaatctgagcacctgtacaaactagaaacactaga 59883

                               
Query: 207   cccctacagaaatgctat 224
             | |||| |||||||||||
Sbjct: 59884 cgcctagagaaatgctat 59901



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 64/72 (88%), Gaps = 1/72 (1%)
 Strand = Plus / Plus

                                                                         
Query: 264   ttacaccattccatgagcaaaattgtgttccatctcaggaggtgatgctaaaccataaac 323
             ||||||||| ||| |||||||||||||| | ||||||||| |  ||||||||||||||||
Sbjct: 59934 ttacaccatcccacgagcaaaattgtgtccaatctcagga-gaaatgctaaaccataaac 59992

                         
Query: 324   aaataattcaag 335
             ||||| ||||||
Sbjct: 59993 aaatagttcaag 60004
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>dbj|AK072094.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116F16, full
            insert sequence
          Length = 4261

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 69/78 (88%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                        
Query: 147  accacaatgacacctttcaactacaaaatcttaacacctgtacaaactaaaagcactagg 206
            ||||||||| ||||||| ||||||||||||| | ||||||||||||||| || |||||| 
Sbjct: 4000 accacaatgccaccttt-aactacaaaatctgagcacctgtacaaactagaaacactaga 3942

                              
Query: 207  cccctacagaaatgctat 224
            | |||| |||||||||||
Sbjct: 3941 cgcctagagaaatgctat 3924



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 64/72 (88%), Gaps = 1/72 (1%)
 Strand = Plus / Minus

                                                                        
Query: 264  ttacaccattccatgagcaaaattgtgttccatctcaggaggtgatgctaaaccataaac 323
            ||||||||| ||| |||||||||||||| | ||||||||| |  ||||||||||||||||
Sbjct: 3891 ttacaccatcccacgagcaaaattgtgtccaatctcagga-gaaatgctaaaccataaac 3833

                        
Query: 324  aaataattcaag 335
            ||||| ||||||
Sbjct: 3832 aaatagttcaag 3821
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>dbj|AK072085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119B08, full
            insert sequence
          Length = 4303

 Score = 75.8 bits (38), Expect = 8e-11
 Identities = 69/78 (88%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                        
Query: 147  accacaatgacacctttcaactacaaaatcttaacacctgtacaaactaaaagcactagg 206
            ||||||||| ||||||| ||||||||||||| | ||||||||||||||| || |||||| 
Sbjct: 4042 accacaatgccaccttt-aactacaaaatctgagcacctgtacaaactagaaacactaga 3984

                              
Query: 207  cccctacagaaatgctat 224
            | |||| |||||||||||
Sbjct: 3983 cgcctagagaaatgctat 3966



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 64/72 (88%), Gaps = 1/72 (1%)
 Strand = Plus / Minus

                                                                        
Query: 264  ttacaccattccatgagcaaaattgtgttccatctcaggaggtgatgctaaaccataaac 323
            ||||||||| ||| |||||||||||||| | ||||||||| |  ||||||||||||||||
Sbjct: 3933 ttacaccatcccacgagcaaaattgtgtccaatctcagga-gaaatgctaaaccataaac 3875

                        
Query: 324  aaataattcaag 335
            ||||| ||||||
Sbjct: 3874 aaatagttcaag 3863
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>gb|AC068919.4| Homo sapiens BAC clone RP11-340I19 from 2, complete sequence
          Length = 164350

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 8     gaaacttgtcaaatataagtta 29
             ||||||||||||||||||||||
Sbjct: 42708 gaaacttgtcaaatataagtta 42687
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>ref|XM_463462.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3249

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 311  ctaaaccataaacaaataattcaag 335
            |||||||||||||||||| ||||||
Sbjct: 3249 ctaaaccataaacaaatagttcaag 3225
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>emb|AL732598.10| Zebrafish DNA sequence from clone CH211-10E8 in linkage group 6,
             complete sequence
          Length = 88982

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    tcatatcttcatatagccaaa 70
             |||||||||||||||||||||
Sbjct: 20961 tcatatcttcatatagccaaa 20981
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>emb|CT030648.7| Mouse DNA sequence from clone RP24-440M15 on chromosome 17, complete
             sequence
          Length = 206631

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 230   acctccccgagatatttatct 250
             |||||||||||||||||||||
Sbjct: 76869 acctccccgagatatttatct 76849
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>gb|AC161807.12| Mus musculus chromosome 1, clone RP24-229G16, complete sequence
          Length = 144324

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 312   taaaccataaacaaataattcaag 335
             |||| |||||||||||||||||||
Sbjct: 35622 taaaacataaacaaataattcaag 35645
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>gb|AC026130.15| Homo sapiens chromosome 17, clone RP11-801J18, complete sequence
          Length = 182909

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   ccctacagaaatgctatttgttac 231
             ||||||||||| ||||||||||||
Sbjct: 90281 ccctacagaaaggctatttgttac 90304
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>gb|AC025518.8| Homo sapiens chromosome 17, clone RP11-713H12, complete sequence
          Length = 176355

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 208    ccctacagaaatgctatttgttac 231
              ||||||||||| ||||||||||||
Sbjct: 154044 ccctacagaaaggctatttgttac 154067
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>gb|AC098870.3| Homo sapiens BAC clone RP11-651C19 from 4, complete sequence
          Length = 163597

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   tgagcaaaattgtgttccat 296
             ||||||||||||||||||||
Sbjct: 53317 tgagcaaaattgtgttccat 53336
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>gb|AC016575.7| Homo sapiens chromosome 5 clone CTB-40H15, complete sequence
          Length = 184562

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   caccattccatgagcaaaat 286
             ||||||||||||||||||||
Sbjct: 79603 caccattccatgagcaaaat 79584
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 269      ccattccatgagcaaaattg 288
                ||||||||||||||||||||
Sbjct: 10612320 ccattccatgagcaaaattg 10612339
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>gb|AC097108.5| Homo sapiens BAC clone RP11-745K4 from 4, complete sequence
          Length = 207516

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    tgagcaaaattgtgttccat 296
              ||||||||||||||||||||
Sbjct: 187175 tgagcaaaattgtgttccat 187194
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>dbj|AP004158.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1118_F05
          Length = 134247

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 269   ccattccatgagcaaaattg 288
             ||||||||||||||||||||
Sbjct: 39960 ccattccatgagcaaaattg 39979
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>emb|CR377211.7| Zebrafish DNA sequence from clone DKEYP-13A3 in linkage group 2, complete
              sequence
          Length = 186342

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 153    atgacacctttcaactacaa 172
              ||||||||||||||||||||
Sbjct: 176408 atgacacctttcaactacaa 176389


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,328,648
Number of Sequences: 3902068
Number of extensions: 3328648
Number of successful extensions: 55707
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55658
Number of HSP's gapped (non-prelim): 45
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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