ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl22h01 |
|---|---|
| Clone Library Name | barley_pub |
>IPT_PSESS (P06619) Isopentenyl transferase (Dimethylallyl transferase) (EC| 2.5.1.-) (Trans-zeatin producing protein) Length = 234 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/52 (30%), Positives = 27/52 (51%) Frame = +3 Query: 237 ERDGCTLQHAIGPCRQPPEEVQRNRRHLVAEPRVPQGVQACKENHNTERCDV 392 +R C A G R PEE+Q RR + R+ +GV + +E ++ + +V Sbjct: 33 DRVQCCFDIATGSGRPHPEELQSTRRIYLDNRRISEGVISAEEANDRLKLEV 84
>BAS1_YEAST (P22035) Myb-like DNA-binding protein BAS1| Length = 811 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 69 PS*NTDIQATEKATNNDIVQFNFSATTRRPH 161 P NT I ATNN+I+Q N SA + P+ Sbjct: 563 PQANTLIPTNSTATNNEIIQGNVSANSMSPN 593
>XYLT1_PANTR (Q5QQ57) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (Peptide O-xylosyltransferase 1) Length = 945 Score = 29.3 bits (64), Expect = 2.3 Identities = 19/43 (44%), Positives = 22/43 (51%) Frame = +3 Query: 219 GAGSRSERDGCTLQHAIGPCRQPPEEVQRNRRHLVAEPRVPQG 347 GAG R R G A+G QPP +R RR L AEP +G Sbjct: 41 GAGER--RGGA----AVGGGEQPPPAPRRERRDLPAEPAAARG 77
>AERA_AERSO (Q06304) Aerolysin precursor (Hemolysin)| Length = 488 Score = 29.3 bits (64), Expect = 2.3 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Frame = +1 Query: 58 KDQNHPKTQTYRQRKRLQTTT*FSSIFRQPRVDP--IIISVAAIEH-ARHRATETSKALD 228 K N KT TY +++ T + F+ P V + I +AA + A + T++ + Sbjct: 246 KATNWSKTDTYSLSEKVTT----KNKFQWPLVGETELAIEIAASQSWASQKGGSTTETVS 301 Query: 229 REARETVAPYSMLSV 273 EAR TV P+S L V Sbjct: 302 VEARPTVPPHSSLPV 316
>AERA_AERSA (Q08676) Aerolysin precursor (Hemolysin-3)| Length = 489 Score = 29.3 bits (64), Expect = 2.3 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%) Frame = +1 Query: 58 KDQNHPKTQTYRQRKRLQTTT*FSSIFRQPRVDP--IIISVAAIEH-ARHRATETSKALD 228 K N KT TY +++ T + F+ P V + I +AA + A + T++ + Sbjct: 247 KATNWSKTDTYSLSEKVTT----KNKFQWPLVGETELAIEIAASQSWASQKGGSTTETVS 302 Query: 229 REARETVAPYSMLSV 273 EAR TV P+S L V Sbjct: 303 VEARPTVPPHSSLPV 317
>ZAN_MOUSE (O88799) Zonadhesin precursor| Length = 5376 Score = 29.3 bits (64), Expect = 2.3 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 15/84 (17%) Frame = -2 Query: 381 VPCCGFP---CRPVHPEAPEVPPQDAVCSAE---------LLQEAACKD-R*HAVRCNR- 244 +P C P C P AP + VC A+ L + CKD + + N+ Sbjct: 4278 LPSCFDPEGLCGGASPRAPSTCREGCVCEADYVLREDKCVLRTQCGCKDAQGDLIPANKT 4337 Query: 243 -LSRFAIQRLTCFGGSMPSMFYSC 175 L+R Q+ TC GG++ + C Sbjct: 4338 WLTRGCAQKCTCKGGNIHCWNFKC 4361 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 12/74 (16%) Frame = -2 Query: 360 CRPVHPEAPEVPPQDAVCSAE---------LLQEAACKDR*HAV---RCNRLSRFAIQRL 217 CR PEAP + VC + L E CKD + ++R Q Sbjct: 2724 CRGTSPEAPSTCKEGCVCDPDYVLSNDKCVLRIECGCKDAQGVLIPAGKTWINRGCTQSC 2783 Query: 216 TCFGGSMPSMFYSC 175 +C GG++ + C Sbjct: 2784 SCMGGAIQCQNFKC 2797
>SPRR4_MOUSE (Q8CGN8) Small proline-rich protein 4| Length = 76 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Frame = +3 Query: 273 PCRQPPEEVQRNRRHLVAEPRVPQGVQACKENHNT----ERCDVQDD 401 PC+ PP + Q +P VPQ + C T E+C Q D Sbjct: 24 PCQPPPTKCQEACVPKTKDPCVPQAKKQCPARSTTNPAQEKCPAQQD 70
>VE7_HPV25 (P36823) Protein E7| Length = 102 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +1 Query: 142 QPRVDPIIISVAAIEHARHRATETSKALDREARETVAP 255 QP V P+ + A H+ TE A+DR + VAP Sbjct: 19 QPEVQPVDLFCEEELPAEHQETEEEPAIDRTPYKVVAP 56
>NCKX6_HUMAN (Q6J4K2) Sodium/potassium/calcium exchanger 6 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 6) (Solute carrier family 24 member 6) Length = 584 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = -1 Query: 379 SVLWFSLQACTP*GTRGSATRCRLFR*TSSGGCLQGPIACCKVQPSLSLRDPAPYL 212 SVL L A T GTRGS+T + + G Q P+ C+ L++ D ++ Sbjct: 13 SVLCVLLMAETVSGTRGSSTGAHISPQFPASGVNQTPVVDCRKVCGLNVSDRCDFI 68
>SIPB_SALTY (Q56019) Cell invasion protein sipB (Effector protein sipB)| Length = 593 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = +1 Query: 175 AAIEHARHRATETSKALDREARETV---APYSMLSVLAGSLLKKFSGT 309 AA+E A ATE +ALD+ TV + A ++L KF GT Sbjct: 186 AAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGT 233
>SIPB_SALTI (Q56134) Cell invasion protein sipB (Effector protein sipB)| Length = 593 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = +1 Query: 175 AAIEHARHRATETSKALDREARETV---APYSMLSVLAGSLLKKFSGT 309 AA+E A ATE +ALD+ TV + A ++L KF GT Sbjct: 186 AAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGT 233
>SIPB_SALDU (Q79BT1) Cell invasion protein sipB (Effector protein sipB)| Length = 593 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%) Frame = +1 Query: 175 AAIEHARHRATETSKALDREARETV---APYSMLSVLAGSLLKKFSGT 309 AA+E A ATE +ALD+ TV + A ++L KF GT Sbjct: 186 AAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEKADNILTKFQGT 233
>NU5M_RHIST (P50367) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 654 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = +1 Query: 211 TSKALDREARETVAPYSMLSVLAGSLLKKFSGTD 312 T+K LDR A E V PY +++V S K SG D Sbjct: 574 TNKILDRGAIELVGPYGLVNVFK-SASNKVSGLD 606
>CORT_DROME (Q960N3) Protein cortex| Length = 483 Score = 28.1 bits (61), Expect = 5.2 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = +1 Query: 178 AIEHARHRATETSKALDREARETVAPYSMLSVLAGSLLKKFSGTDGILWRNL 333 AI++A H +D Y+M+ +G ++ SG D +LWRNL Sbjct: 146 AIQNATHEMPGICSPVD---------YNMMDWSSGGMVAMSSGQDVMLWRNL 188
>DLGP4_HUMAN (Q9Y2H0) Disks large-associated protein 4 (DAP-4)| (SAP90/PSD-95-associated protein 4) (SAPAP4) (PSD-95/SAP90-binding protein 4) Length = 989 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = -2 Query: 345 PEAPEVPPQDAVCSAELLQEAACKDR*HAVRCNRLSRFAIQRLTCFGGS 199 PEAPE PP+ A +E + + A +LS IQ T GS Sbjct: 630 PEAPEPPPKHAALKSEQGTLTSSESHPEAAPKRKLSSIGIQERTRRNGS 678
>RNZ_BACTN (Q89ZN1) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 316 Score = 27.7 bits (60), Expect = 6.8 Identities = 8/11 (72%), Positives = 10/11 (90%) Frame = -2 Query: 396 PVRHTVPCCGF 364 P+RH +PCCGF Sbjct: 140 PLRHRIPCCGF 150
>IRF4_HUMAN (Q15306) Interferon regulatory factor 4 (IRF-4)| (Lymphocyte-specific interferon regulatory factor) (LSIRF) (NF-EM5) (Multiple myeloma oncogene 1) Length = 451 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = -2 Query: 366 FPCRPVHPEAPEVPPQDAVCSAELLQEAACK 274 + C P +AP VP + ++ SAE L + C+ Sbjct: 221 YACAPPESQAPGVPTEPSIRSAEALAFSDCR 251
>SLYA_EDWTA (Q9F6B2) Transcriptional regulator slyA (Edwardsiella haemolysin| activator) Length = 143 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +2 Query: 128 VQFFGNHASTPSSSQLQL*NMLGIEPPKQVR 220 V + H P SQ+QL +GIE P VR Sbjct: 35 VTLYNIHRLPPDQSQIQLAKAIGIEQPSLVR 65 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,334,032 Number of Sequences: 219361 Number of extensions: 1097486 Number of successful extensions: 2924 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 2844 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2924 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
