Clone Name | rbastl22g11 |
---|---|
Clone Library Name | barley_pub |
>emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on chromosome 10 Contains the 5' end of the PPP3CB gene for protein phosphatase 3 (formerly 2B) catalytic subunit beta isoform (calcineurin A beta), two novel genes (FLJ37318), the 3' end of a novel gene, a ribosomal protein S26 (RPS26) pseudogene and a CpG island, complete sequence Length = 152161 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 240 aaaacaacctggtaatctccaa 261 |||||||||||||||||||||| Sbjct: 43260 aaaacaacctggtaatctccaa 43281
>gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, complete sequence Length = 190681 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 240 aaaacaacctggtaatctccaa 261 |||||||||||||||||||||| Sbjct: 177522 aaaacaacctggtaatctccaa 177501
>gb|AC155957.2| Xenopus tropicalis clone CH216-18G23, complete sequence Length = 89687 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 tttcatgattaaaacaagaag 68 ||||||||||||||||||||| Sbjct: 10526 tttcatgattaaaacaagaag 10546
>gb|AC132116.3| Mus musculus BAC clone RP24-158K7 from chromosome 2, complete sequence Length = 165307 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 ctaaacatttcatgattaaaa 61 ||||||||||||||||||||| Sbjct: 53815 ctaaacatttcatgattaaaa 53795
>gb|AC122835.3| Mus musculus BAC clone RP23-187I18 from 3, complete sequence Length = 218449 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 taaacatttcatgattaaaac 62 ||||||||||||||||||||| Sbjct: 115533 taaacatttcatgattaaaac 115553
>gb|AC155993.2| Xenopus tropicalis clone ISB1-298C4, complete sequence Length = 89687 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 tttcatgattaaaacaagaag 68 ||||||||||||||||||||| Sbjct: 10526 tttcatgattaaaacaagaag 10546
>emb|AL929030.7| Zebrafish DNA sequence from clone CH211-69M14 in linkage group 20, complete sequence Length = 173192 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aaactaaacatttcatgatta 58 ||||||||||||||||||||| Sbjct: 166552 aaactaaacatttcatgatta 166532
>emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, complete sequence Length = 267826 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 aaactaaacatttcatgatta 58 ||||||||||||||||||||| Sbjct: 59222 aaactaaacatttcatgatta 59202
>emb|AL772214.3| Mouse DNA sequence from clone RP23-370C18 on chromosome 2, complete sequence Length = 181349 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 ctaaacatttcatgattaaaa 61 ||||||||||||||||||||| Sbjct: 156283 ctaaacatttcatgattaaaa 156303
>gb|AC166111.4| Mus musculus BAC clone RP23-68O7 from chromosome 1, complete sequence Length = 185692 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aaactaaacatttcatgatt 57 |||||||||||||||||||| Sbjct: 146120 aaactaaacatttcatgatt 146101
>emb|CR759945.8| Zebrafish DNA sequence from clone CH211-167E4 in linkage group 13, complete sequence Length = 146960 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 atgaaaactaaacatttcat 53 |||||||||||||||||||| Sbjct: 88211 atgaaaactaaacatttcat 88192
>emb|AL161738.15| Human DNA sequence from clone RP11-549G1 on chromosome 1q31.2-32.1, complete sequence Length = 148844 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 aaacaagcagcagagaatat 295 |||||||||||||||||||| Sbjct: 4248 aaacaagcagcagagaatat 4267
>gb|AC026122.14| Homo sapiens 12 BAC RP11-902D13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184834 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 attaaaacaagaagatagat 74 |||||||||||||||||||| Sbjct: 94080 attaaaacaagaagatagat 94099
>gb|AC108391.14| Mus musculus chromosome 1, clone RP23-16N14, complete sequence Length = 257730 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 aaactaaacatttcatgatt 57 |||||||||||||||||||| Sbjct: 100173 aaactaaacatttcatgatt 100154
>dbj|AK069115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008H02, full insert sequence Length = 2846 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 231 ggacgagagaaaacaacctggtaatctccaag 262 ||||||||||| |||| |||||| |||||||| Sbjct: 2638 ggacgagagaatacaatctggtagtctccaag 2607
>emb|AL772273.11| Zebrafish DNA sequence from clone CH211-153P8, complete sequence Length = 171830 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 atgaaaactaaacatttcat 53 |||||||||||||||||||| Sbjct: 44228 atgaaaactaaacatttcat 44247
>gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202i7, complete sequence Length = 226567 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gatagccatgaaaactaaac 46 |||||||||||||||||||| Sbjct: 38449 gatagccatgaaaactaaac 38468 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,602,185 Number of Sequences: 3902068 Number of extensions: 2602185 Number of successful extensions: 47993 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47969 Number of HSP's gapped (non-prelim): 24 length of query: 324 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 302 effective length of database: 17,147,199,772 effective search space: 5178454331144 effective search space used: 5178454331144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)