Clone Name | rbastl22g05 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 232 bits (117), Expect = 2e-58 Identities = 148/158 (93%), Gaps = 4/158 (2%) Strand = Plus / Minus Query: 1 ttcattattgggcaaaacaagggattttttctgcacacaacgatgcattgaccggtagcc 60 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837 Query: 61 agctgagctgagcttccgcatgccgatcaaacccggcgggcacgcaccc----ttattgc 116 ||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||| Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777 Query: 117 cttaattattcatgcaccggcacaactttttgtcacac 154 ||||||||||||||||||||||||||| | |||||||| Sbjct: 2776 cttaattattcatgcaccggcacaactctctgtcacac 2739
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Plus Query: 108 ccttattgccttaattattcatg 130 ||||||||||||||||||||||| Sbjct: 136193 ccttattgccttaattattcatg 136215 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Plus Query: 108 ccttattgccttaattattcatg 130 ||||||||||||||||||||||| Sbjct: 94214 ccttattgccttaattattcatg 94236
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Plus Query: 108 ccttattgccttaattattcatg 130 ||||||||||||||||||||||| Sbjct: 21745017 ccttattgccttaattattcatg 21745039 Score = 46.1 bits (23), Expect = 0.030 Identities = 23/23 (100%) Strand = Plus / Plus Query: 108 ccttattgccttaattattcatg 130 ||||||||||||||||||||||| Sbjct: 21703038 ccttattgccttaattattcatg 21703060
>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence Length = 37711 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 aaacaagggattttttctgca 35 ||||||||||||||||||||| Sbjct: 32565 aaacaagggattttttctgca 32585
>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24, complete sequence Length = 155584 Score = 42.1 bits (21), Expect = 0.47 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 gcaaaacaagggattttttct 32 ||||||||||||||||||||| Sbjct: 39634 gcaaaacaagggattttttct 39614
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence Length = 1129 Score = 40.1 bits (20), Expect = 1.9 Identities = 35/40 (87%) Strand = Plus / Minus Query: 4 attattgggcaaaacaagggattttttctgcacacaacga 43 ||||||||||||| |||||| |||||||| |||| |||| Sbjct: 1089 attattgggcaaatgaagggaatttttctgtacacgacga 1050
>gb|AC165084.6| Mus musculus BAC clone RP23-352H11 from chromosome 7, complete sequence Length = 182827 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 111 tattgccttaattattcat 129 ||||||||||||||||||| Sbjct: 27354 tattgccttaattattcat 27336
>ref|XM_658746.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6234.2), mRNA Length = 1332 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 35 acacaacgatgcattgacc 53 ||||||||||||||||||| Sbjct: 153 acacaacgatgcattgacc 171
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 tgggcaaaacaagggattt 27 ||||||||||||||||||| Sbjct: 3842397 tgggcaaaacaagggattt 3842415
>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence Length = 187121 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 ccagctgagctgagcttcc 77 ||||||||||||||||||| Sbjct: 93147 ccagctgagctgagcttcc 93129
>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete sequence Length = 157981 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 gcaaaacaagggatttttt 30 ||||||||||||||||||| Sbjct: 129429 gcaaaacaagggatttttt 129411
>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence Length = 140774 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 gcaaaacaagggatttttt 30 ||||||||||||||||||| Sbjct: 89166 gcaaaacaagggatttttt 89184
>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence Length = 228713 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 126 tcatgcaccggcacaactt 144 ||||||||||||||||||| Sbjct: 177708 tcatgcaccggcacaactt 177690
>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11, complete sequence Length = 132151 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 tgggcaaaacaagggattt 27 ||||||||||||||||||| Sbjct: 121021 tgggcaaaacaagggattt 121039
>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence Length = 185162 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 agctgagctgagcttccgc 79 ||||||||||||||||||| Sbjct: 29471 agctgagctgagcttccgc 29453
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 tgggcaaaacaagggattt 27 ||||||||||||||||||| Sbjct: 3842508 tgggcaaaacaagggattt 3842526
>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015N19, complete sequence Length = 168430 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 tgggcaaaacaagggattt 27 ||||||||||||||||||| Sbjct: 48870 tgggcaaaacaagggattt 48888
>gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 204394 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 28 tttctgcacacaacgatgcattg 50 |||||||||||||||||| |||| Sbjct: 194191 tttctgcacacaacgatgaattg 194213 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 28 tttctgcacacaacgatgcattg 50 |||||||||||||||||| |||| Sbjct: 65513 tttctgcacacaacgatgaattg 65491
>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence Length = 199128 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 agctgagctgagcttccgc 79 ||||||||||||||||||| Sbjct: 101444 agctgagctgagcttccgc 101426
>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full insert sequence Length = 3941 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 tgggcaaaacaagggattt 27 ||||||||||||||||||| Sbjct: 1147 tgggcaaaacaagggattt 1165
>gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, complete sequence Length = 228343 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 tattgccttaattattcat 129 ||||||||||||||||||| Sbjct: 35076 tattgccttaattattcat 35094
>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete sequence Length = 227565 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 gcaaaacaagggatttttt 30 ||||||||||||||||||| Sbjct: 225395 gcaaaacaagggatttttt 225377
>emb|CT025156.14| M.truncatula DNA sequence from clone MTH2-117A9 on chromosome 3, complete sequence Length = 113846 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 136 gcacaactttttgtcacac 154 ||||||||||||||||||| Sbjct: 73485 gcacaactttttgtcacac 73467
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 111 tattgccttaattattcatgcac 133 ||||||||||| ||||||||||| Sbjct: 1340742 tattgccttaactattcatgcac 1340720
>emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chromosome 12, complete sequence Length = 156278 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 28 tttctgcacacaacgatgcattg 50 |||||||||||||||||| |||| Sbjct: 97910 tttctgcacacaacgatgaattg 97888 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,100,068 Number of Sequences: 3902068 Number of extensions: 1100068 Number of successful extensions: 75799 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75646 Number of HSP's gapped (non-prelim): 152 length of query: 154 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 132 effective length of database: 17,147,199,772 effective search space: 2263430369904 effective search space used: 2263430369904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)