ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 232 2e-58
2gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.030
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.030
4emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.47
5emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.47
6gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 40 1.9
7gb|AC165084.6| Mus musculus BAC clone RP23-352H11 from chromosom... 38 7.4
8ref|XM_658746.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 7.4
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.4
10gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosom... 38 7.4
11emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in ... 38 7.4
12emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, ... 38 7.4
13emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, com... 38 7.4
14gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 38 7.4
15gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, comp... 38 7.4
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
17gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.4
18gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell P... 38 7.4
19gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, compl... 38 7.4
20dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.4
21gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, comple... 38 7.4
22emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in... 38 7.4
23emb|CT025156.14| M.truncatula DNA sequence from clone MTH2-117A9... 38 7.4
24gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome 38 7.4
25emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chr... 38 7.4

>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  232 bits (117), Expect = 2e-58
 Identities = 148/158 (93%), Gaps = 4/158 (2%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttcattattgggcaaaacaagggattttttctgcacacaacgatgcattgaccggtagcc 60
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 61   agctgagctgagcttccgcatgccgatcaaacccggcgggcacgcaccc----ttattgc 116
            ||||||||||||||||||||||||||||| ||||| || ||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                                  
Query: 117  cttaattattcatgcaccggcacaactttttgtcacac 154
            ||||||||||||||||||||||||||| | ||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgtcacac 2739



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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 108    ccttattgccttaattattcatg 130
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 108   ccttattgccttaattattcatg 130
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 108      ccttattgccttaattattcatg 130
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.030
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 108      ccttattgccttaattattcatg 130
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060



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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    aaacaagggattttttctgca 35
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585



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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    gcaaaacaagggattttttct 32
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614



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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA sequence
          Length = 1129

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 4    attattgggcaaaacaagggattttttctgcacacaacga 43
            |||||||||||||  |||||| |||||||| |||| ||||
Sbjct: 1089 attattgggcaaatgaagggaatttttctgtacacgacga 1050



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>gb|AC165084.6| Mus musculus BAC clone RP23-352H11 from chromosome 7, complete sequence
          Length = 182827

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 111   tattgccttaattattcat 129
             |||||||||||||||||||
Sbjct: 27354 tattgccttaattattcat 27336



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>ref|XM_658746.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6234.2), mRNA
          Length = 1332

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 35  acacaacgatgcattgacc 53
           |||||||||||||||||||
Sbjct: 153 acacaacgatgcattgacc 171



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 9       tgggcaaaacaagggattt 27
               |||||||||||||||||||
Sbjct: 3842397 tgggcaaaacaagggattt 3842415



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>gb|AC127290.3| Mus musculus BAC clone RP23-364F13 from chromosome 5, complete sequence
          Length = 187121

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 59    ccagctgagctgagcttcc 77
             |||||||||||||||||||
Sbjct: 93147 ccagctgagctgagcttcc 93129



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>emb|BX901894.23| Zebrafish DNA sequence from clone DKEY-71L4 in linkage group 4, complete
              sequence
          Length = 157981

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 12     gcaaaacaagggatttttt 30
              |||||||||||||||||||
Sbjct: 129429 gcaaaacaagggatttttt 129411



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>emb|CR381657.7| Zebrafish DNA sequence from clone CH211-229L10, complete sequence
          Length = 140774

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 12    gcaaaacaagggatttttt 30
             |||||||||||||||||||
Sbjct: 89166 gcaaaacaagggatttttt 89184



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>emb|BX890609.7| Zebrafish DNA sequence from clone DKEY-56E5, complete sequence
          Length = 228713

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 126    tcatgcaccggcacaactt 144
              |||||||||||||||||||
Sbjct: 177708 tcatgcaccggcacaactt 177690



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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAa0091P11,
              complete sequence
          Length = 132151

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      tgggcaaaacaagggattt 27
              |||||||||||||||||||
Sbjct: 121021 tgggcaaaacaagggattt 121039



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>gb|AC140132.3| Homo sapiens chromosome 5 clone RP11-1308L4, complete sequence
          Length = 185162

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 61    agctgagctgagcttccgc 79
             |||||||||||||||||||
Sbjct: 29471 agctgagctgagcttccgc 29453



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 9       tgggcaaaacaagggattt 27
               |||||||||||||||||||
Sbjct: 3842508 tgggcaaaacaagggattt 3842526



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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     tgggcaaaacaagggattt 27
             |||||||||||||||||||
Sbjct: 48870 tgggcaaaacaagggattt 48888



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>gb|AC079644.9|AC079644 Mus musculus 12 BAC RP23-174O6 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 204394

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 28     tttctgcacacaacgatgcattg 50
              |||||||||||||||||| ||||
Sbjct: 194191 tttctgcacacaacgatgaattg 194213



 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 28    tttctgcacacaacgatgcattg 50
             |||||||||||||||||| ||||
Sbjct: 65513 tttctgcacacaacgatgaattg 65491



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>gb|AC091946.5| Homo sapiens chromosome 5 clone RP11-360I2, complete sequence
          Length = 199128

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 61     agctgagctgagcttccgc 79
              |||||||||||||||||||
Sbjct: 101444 agctgagctgagcttccgc 101426



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>dbj|AK122024.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111P14, full
            insert sequence
          Length = 3941

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 9    tgggcaaaacaagggattt 27
            |||||||||||||||||||
Sbjct: 1147 tgggcaaaacaagggattt 1165



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>gb|AC151412.2| Mus musculus BAC clone RP23-229E19 from 7, complete sequence
          Length = 228343

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 111   tattgccttaattattcat 129
             |||||||||||||||||||
Sbjct: 35076 tattgccttaattattcat 35094



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>emb|BX005245.26| Zebrafish DNA sequence from clone DKEY-56M15 in linkage group 4, complete
              sequence
          Length = 227565

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 12     gcaaaacaagggatttttt 30
              |||||||||||||||||||
Sbjct: 225395 gcaaaacaagggatttttt 225377



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>emb|CT025156.14| M.truncatula DNA sequence from clone MTH2-117A9 on chromosome 3,
             complete sequence
          Length = 113846

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 136   gcacaactttttgtcacac 154
             |||||||||||||||||||
Sbjct: 73485 gcacaactttttgtcacac 73467



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>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome
          Length = 1698955

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 111     tattgccttaattattcatgcac 133
               ||||||||||| |||||||||||
Sbjct: 1340742 tattgccttaactattcatgcac 1340720



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>emb|CT030175.7| Mouse DNA sequence from clone RP24-470M12 on chromosome 12, complete
             sequence
          Length = 156278

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 28    tttctgcacacaacgatgcattg 50
             |||||||||||||||||| ||||
Sbjct: 97910 tttctgcacacaacgatgaattg 97888


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,100,068
Number of Sequences: 3902068
Number of extensions: 1100068
Number of successful extensions: 75799
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75646
Number of HSP's gapped (non-prelim): 152
length of query: 154
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 132
effective length of database: 17,147,199,772
effective search space: 2263430369904
effective search space used: 2263430369904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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