ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl22g03 |
|---|---|
| Clone Library Name | barley_pub |
>SNF4_YEAST (P12904) Nuclear protein SNF4 (Regulatory protein CAT3)| Length = 322 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +1 Query: 22 STTARILLEDQNSASPNKYVLSILHIYEETPRIGDTLKESHFTSSPLTTQKLTVNVNMQS 201 S + RI L DQ+ + + V+S+L Y + +E+HF P+ + NM+S Sbjct: 142 SRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKS 201
>LYTS_STRA5 (Q8E218) Sensor protein lytS (EC 2.7.13.3)| Length = 581 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/54 (31%), Positives = 32/54 (59%) Frame = +1 Query: 52 QNSASPNKYVLSILHIYEETPRIGDTLKESHFTSSPLTTQKLTVNVNMQSLSTL 213 Q S S + Y++S + + + +IGD LKE+H P T+Q + +++ +S+ L Sbjct: 114 QGSFSGSFYIVSSVLVGIVSGKIGDKLKENHL--YPSTSQVILISIIAESIQML 165
>LYTS_STRA3 (Q8E7H4) Sensor protein lytS (EC 2.7.13.3)| Length = 581 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/54 (31%), Positives = 32/54 (59%) Frame = +1 Query: 52 QNSASPNKYVLSILHIYEETPRIGDTLKESHFTSSPLTTQKLTVNVNMQSLSTL 213 Q S S + Y++S + + + +IGD LKE+H P T+Q + +++ +S+ L Sbjct: 114 QGSFSGSFYIVSSVLVGIVSGKIGDKLKENHL--YPSTSQVILISIIAESIQML 165
>SPTA1_HUMAN (P02549) Spectrin alpha chain, erythrocyte (Erythroid alpha-spectrin)| Length = 2418 Score = 29.6 bits (65), Expect = 2.0 Identities = 21/74 (28%), Positives = 35/74 (47%) Frame = +1 Query: 4 IALTILSTTARILLEDQNSASPNKYVLSILHIYEETPRIGDTLKESHFTSSPLTTQKLTV 183 IA L R++LE+ S P I E T R ++E HF + + ++ ++ Sbjct: 826 IASKKLLNRHRVILENIASHEPR--------IQEITERGNKMVEEGHFAAEDVASRVKSL 877 Query: 184 NVNMQSLSTLISKR 225 N NM+SL ++R Sbjct: 878 NQNMESLRARAARR 891
>ACL1_SCHPO (Q9P7W3) Probable ATP-citrate synthase subunit 1 (EC 2.3.3.8)| (ATP-citrate (pro-S-)-lyase 1) (Citrate cleavage enzyme subunit 1) Length = 615 Score = 28.5 bits (62), Expect = 4.4 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = -3 Query: 323 WLMATLPGYLLAAIVDILE*SSQSGPCVLAILNLLL 216 WL LP Y + +L+ ++ GPCV +N ++ Sbjct: 397 WLRRRLPSYATKFLEMVLQLTADHGPCVSGAMNTII 432
>ZNF42_HUMAN (P28698) Zinc finger protein 42 (Myeloid zinc finger 1) (MZF-1)| (Zinc finger and SCAN domain-containing protein 6) Length = 734 Score = 28.1 bits (61), Expect = 5.7 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 130 ACPQCGESLRRYVKLITH 77 ACP+CG+S R++ L H Sbjct: 654 ACPECGQSFRQHANLTQH 671
>GFI1_DROME (Q9N658) Zinc finger protein sens (Protein senseless)| Length = 541 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = -1 Query: 157 EKK*NGTLSACPQCGESLRRYVKLITH--IYSD 65 E+K +G C QCG+S +R L TH I+SD Sbjct: 405 EEKRSGRNFQCKQCGKSFKRSSTLSTHLLIHSD 437
>RPC1_GIALA (P25202) DNA-directed RNA polymerase III largest subunit (EC 2.7.7.6)| Length = 1741 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/49 (24%), Positives = 31/49 (63%) Frame = +1 Query: 82 LSILHIYEETPRIGDTLKESHFTSSPLTTQKLTVNVNMQSLSTLISKRF 228 L+ ++I + PR+ + + S+P+TT +L V+V+ + L+ +++++ Sbjct: 1319 LASMNITQGVPRLKEIVDGVVKISTPITTVELHVDVDKEELAATVTEKY 1367
>HRH2_RAT (P25102) Histamine H2 receptor (H2R) (Gastric receptor I)| Length = 358 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -3 Query: 245 CVLAILNLLLMSVDRLCMLT 186 C +ILNL ++S+DR C +T Sbjct: 102 CTASILNLFMISLDRYCAVT 121
>HRH2_MOUSE (P97292) Histamine H2 receptor (H2R) (Gastric receptor I)| Length = 358 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -3 Query: 245 CVLAILNLLLMSVDRLCMLT 186 C +ILNL ++S+DR C +T Sbjct: 102 CTASILNLFMISLDRYCAVT 121
>YAP4_YEAST (P40917) AP-1-like transcription factor YAP4 (Transcription| activator CIN5) (Chromosome instability protein 5) Length = 295 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 91 LHIYEETPRIGDTLKESHFTSSPLTT 168 L+ Y+ P++ DT HF S+P TT Sbjct: 134 LNTYQLRPQLSDTHLNCHFNSNPYTT 159
>TRFE_HORSE (P27425) Serotransferrin precursor (Transferrin) (Siderophilin)| (Beta-1 metal-binding globulin) Length = 706 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = -3 Query: 239 LAILNLLLMSVDRLCMLTLTVSFCVVSGEEV 147 LAI LL +V LC+ TV +C VS EV Sbjct: 3 LAIRALLACAVLGLCLAEQTVRWCTVSNHEV 33
>HRH2_CAVPO (P47747) Histamine H2 receptor (H2R) (Gastric receptor I)| Length = 359 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -3 Query: 245 CVLAILNLLLMSVDRLCMLT 186 C +ILNL ++S+DR C +T Sbjct: 102 CTASILNLFMISLDRYCAVT 121
>HRH2_CANFA (P17124) Histamine H2 receptor (H2R) (Gastric receptor I)| Length = 359 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = -3 Query: 245 CVLAILNLLLMSVDRLCMLT 186 C +ILNL ++S+DR C +T Sbjct: 102 CTASILNLFMISLDRYCAVT 121
>ZG9_XENLA (P18738) Gastrula zinc finger protein XLCGF9.1 (Fragment)| Length = 112 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = -1 Query: 127 CPQCGESLRRYVKLITH 77 CPQCG RR LI H Sbjct: 36 CPQCGRKFRRRAHLIVH 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,255,946 Number of Sequences: 219361 Number of extensions: 798818 Number of successful extensions: 2681 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2437 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2681 length of database: 80,573,946 effective HSP length: 86 effective length of database: 61,708,900 effective search space used: 1481013600 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
