ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_468330.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.012
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.012
3dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.012
4dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.012
5dbj|AK059635.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.012
6gb|AE017308.1| Mycoplasma mobile 163K complete genome 42 0.72
7emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chr... 42 0.72
8dbj|AK134369.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 2.8
9gb|AC102462.19| Mus musculus chromosome 1, clone RP24-327F2, com... 40 2.8
10gb|AY111893.1| Zea mays CL16453_1 mRNA sequence 40 2.8
11emb|BX322793.7| Zebrafish DNA sequence from clone CH211-208I8 in... 40 2.8

>ref|XM_468330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2748

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 160  tcaagctctgagctcccggatgtagctggggctcat 195
            ||||||||||||||| ||||||||| | ||||||||
Sbjct: 2748 tcaagctctgagctcacggatgtagttagggctcat 2713



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 160      tcaagctctgagctcccggatgtagctggggctcat 195
                ||||||||||||||| ||||||||| | ||||||||
Sbjct: 34654852 tcaagctctgagctcacggatgtagttagggctcat 34654817



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>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1116_E04
          Length = 94096

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 160   tcaagctctgagctcccggatgtagctggggctcat 195
             ||||||||||||||| ||||||||| | ||||||||
Sbjct: 11803 tcaagctctgagctcacggatgtagttagggctcat 11768



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>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1112_G06
          Length = 122580

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 160    tcaagctctgagctcccggatgtagctggggctcat 195
              ||||||||||||||| ||||||||| | ||||||||
Sbjct: 121467 tcaagctctgagctcacggatgtagttagggctcat 121432



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>dbj|AK059635.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A08, full
           insert sequence
          Length = 876

 Score = 48.1 bits (24), Expect = 0.012
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                               
Query: 160 tcaagctctgagctcccggatgtagctggggctcat 195
           ||||||||||||||| ||||||||| | ||||||||
Sbjct: 623 tcaagctctgagctcacggatgtagttagggctcat 588



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>gb|AE017308.1| Mycoplasma mobile 163K complete genome
          Length = 777079

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 36     taattttacagagcaaagaat 56
              |||||||||||||||||||||
Sbjct: 445569 taattttacagagcaaagaat 445589



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>emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chromosome 4 Contains a
             phospholipase A2, group XIIA (Pla2g12) pseudogene,
             complete sequence
          Length = 200646

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 37    aattttacagagcaaagaata 57
             |||||||||||||||||||||
Sbjct: 33060 aattttacagagcaaagaata 33080



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>dbj|AK134369.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
           enriched library, clone:6030446C19 product:hypothetical
           ARM repeat fold containing protein, full insert sequence
          Length = 3527

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 36  taattttacagagcaaagaa 55
           ||||||||||||||||||||
Sbjct: 653 taattttacagagcaaagaa 672



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>gb|AC102462.19| Mus musculus chromosome 1, clone RP24-327F2, complete sequence
          Length = 141794

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     taattttacagagcaaagaa 55
              ||||||||||||||||||||
Sbjct: 135900 taattttacagagcaaagaa 135919



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>gb|AY111893.1| Zea mays CL16453_1 mRNA sequence
          Length = 633

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 160 tcaagctctgagctcccggatgtagctg 187
           ||||||| | ||||||||||||||||||
Sbjct: 335 tcaagctatcagctcccggatgtagctg 362



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>emb|BX322793.7| Zebrafish DNA sequence from clone CH211-208I8 in linkage group 9,
             complete sequence
          Length = 192039

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    aattttacagagcaaagaat 56
             ||||||||||||||||||||
Sbjct: 13196 aattttacagagcaaagaat 13177


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,564,740
Number of Sequences: 3902068
Number of extensions: 1564740
Number of successful extensions: 115255
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115182
Number of HSP's gapped (non-prelim): 73
length of query: 222
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 200
effective length of database: 17,147,199,772
effective search space: 3429439954400
effective search space used: 3429439954400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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