ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MCH1_GIBZE (Q4IM48) Probable transporter MCH1 28 4.4
2E434_ADE12 (P36710) Early E4 34 kDa protein 27 9.8

>MCH1_GIBZE (Q4IM48) Probable transporter MCH1|
          Length = 572

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 268 VSHPWGLPNLFIQHIFMSLCSCCL 197
           V + W LP L +  +F+ + +CCL
Sbjct: 151 VDNDWSLPFLMLSFVFVGVATCCL 174



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>E434_ADE12 (P36710) Early E4 34 kDa protein|
          Length = 291

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 259 PWGLP----NLFIQHIFMSLCSCCLASYALEVRELFH 161
           PW +      +FI   +MS+C CC A+  +EV +L H
Sbjct: 70  PWDMILTDYEMFILKKYMSVCMCC-ATINVEVTQLLH 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,220,894
Number of Sequences: 219361
Number of extensions: 618364
Number of successful extensions: 911
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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