ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY107387.1| Zea mays PCO149313 mRNA sequence 60 5e-06
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 0.001
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
4gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare str... 52 0.001
5dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
7dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
8dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
9dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.018
10dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.018
11ref|NM_191406.1| Oryza sativa (japonica cultivar-group), predic... 46 0.070
12gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromoso... 44 0.27
13gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, comp... 42 1.1
14dbj|D10511.2| Homo sapiens MAT gene for mitochondrial acetoacety... 42 1.1
15emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 i... 42 1.1
16dbj|AP002433.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 1.1
17emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 i... 40 4.3
18emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in... 40 4.3
19gb|AC145866.3| Pan troglodytes BAC clone RP43-21B7 from 7, compl... 40 4.3
20gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 4.3
21emb|AL159159.21| Human DNA sequence from clone RP11-88J11 on chr... 40 4.3
22emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P... 40 4.3
23emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in... 40 4.3
24emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 i... 40 4.3
25emb|CR548622.8| Zebrafish DNA sequence from clone DKEY-189A9 in ... 40 4.3
26emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, ... 40 4.3
27emb|CR318610.8| Zebrafish DNA sequence from clone CH211-14B14 in... 40 4.3
28emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in... 40 4.3
29gb|AC120338.4| Homo sapiens X BAC RP11-791N19 (Roswell Park Canc... 40 4.3
30gb|AC068305.30|AC068305 Homo sapiens 12 BAC RP11-557F20 (Roswell... 40 4.3
31emb|BX294395.15| Zebrafish DNA sequence from clone CH211-220B11 ... 40 4.3
32emb|BX296526.5| Zebrafish DNA sequence from clone DKEY-229D2 in ... 40 4.3
33emb|BX005463.5| Zebrafish DNA sequence from clone CH211-177H19 i... 40 4.3
34gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete se... 40 4.3
35emb|BX649231.4| Zebrafish DNA sequence from clone DKEY-225H23 in... 40 4.3
36emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in... 40 4.3
37gb|AC110171.29| Mus musculus chromosome 12, clone RP23-400A5, co... 40 4.3
38gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 4.3
39emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 4.3 
>gb|AY107387.1| Zea mays PCO149313 mRNA sequence
          Length = 1336

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                          
Query: 296  acctcaccgccccttggggttcatgatctg 325
            ||||||||||||||||||||||||||||||
Sbjct: 1083 acctcaccgccccttggggttcatgatctg 1054
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                              
Query: 296      acctcaccgccccttggggttcatgatctg 325
                ||||||||| ||||||||||||||||||||
Sbjct: 12284688 acctcaccgtcccttggggttcatgatctg 12284659



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 212      caaactcatgaaaatatgctgaatgaata 240
                |||||||||||| ||||||||||||||||
Sbjct: 12284753 caaactcatgaacatatgctgaatgaata 12284725
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                              
Query: 296      acctcaccgccccttggggttcatgatctg 325
                ||||||||| ||||||||||||||||||||
Sbjct: 12281451 acctcaccgtcccttggggttcatgatctg 12281422



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                             
Query: 212      caaactcatgaaaatatgctgaatgaata 240
                |||||||||||| ||||||||||||||||
Sbjct: 12281516 caaactcatgaacatatgctgaatgaata 12281488
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>gb|AC137699.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0029K10, from chromosome 3, complete sequence
          Length = 135940

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 296   acctcaccgccccttggggttcatgatctg 325
             ||||||||| ||||||||||||||||||||
Sbjct: 54221 acctcaccgtcccttggggttcatgatctg 54192



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 212   caaactcatgaaaatatgctgaatgaata 240
             |||||||||||| ||||||||||||||||
Sbjct: 54286 caaactcatgaacatatgctgaatgaata 54258
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>dbj|AK099791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full
            insert sequence
          Length = 3171

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 296  acctcaccgccccttggggttcatgatctg 325
            ||||||||| ||||||||||||||||||||
Sbjct: 2927 acctcaccgtcccttggggttcatgatctg 2898



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 212  caaactcatgaaaatatgctgaatgaata 240
            |||||||||||| ||||||||||||||||
Sbjct: 2992 caaactcatgaacatatgctgaatgaata 2964
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 150      aaatatctaatatgaaacaattctctgacttc 181
                |||||||||||||| ||||| |||||||||||
Sbjct: 32458183 aaatatctaatatggaacaactctctgacttc 32458152



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 298      ctcaccgccccttggggttcatgatctg 325
                ||||||| ||||||||||||||||||||
Sbjct: 32458055 ctcaccgtcccttggggttcatgatctg 32458028
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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 150   aaatatctaatatgaaacaattctctgacttc 181
             |||||||||||||| ||||| |||||||||||
Sbjct: 45704 aaatatctaatatggaacaactctctgacttc 45673



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 298   ctcaccgccccttggggttcatgatctg 325
             ||||||| ||||||||||||||||||||
Sbjct: 45576 ctcaccgtcccttggggttcatgatctg 45549
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>dbj|AP003371.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1143G03
          Length = 137770

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 150    aaatatctaatatgaaacaattctctgacttc 181
              |||||||||||||| ||||| |||||||||||
Sbjct: 137680 aaatatctaatatggaacaactctctgacttc 137649



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 298    ctcaccgccccttggggttcatgatctg 325
              ||||||| ||||||||||||||||||||
Sbjct: 137552 ctcaccgtcccttggggttcatgatctg 137525
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>dbj|AK105465.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-126-A03, full
            insert sequence
          Length = 1761

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 150  aaatatctaatatgaaacaattctctgacttc 181
            |||||||||||||| ||||| |||||||||||
Sbjct: 1633 aaatatctaatatggaacaactctctgacttc 1602



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 298  ctcaccgccccttggggttcatgatctg 325
            ||||||| ||||||||||||||||||||
Sbjct: 1505 ctcaccgtcccttggggttcatgatctg 1478
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>dbj|AK101775.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064M23, full
            insert sequence
          Length = 3155

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 150  aaatatctaatatgaaacaattctctgacttc 181
            |||||||||||||| ||||| |||||||||||
Sbjct: 3050 aaatatctaatatggaacaactctctgacttc 3019



 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 298  ctcaccgccccttggggttcatgatctg 325
            ||||||| ||||||||||||||||||||
Sbjct: 2922 ctcaccgtcccttggggttcatgatctg 2895
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>ref|NM_191406.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2691

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 299  tcaccgccccttggggttcatgatctg 325
            |||||| ||||||||||||||||||||
Sbjct: 2691 tcaccgtcccttggggttcatgatctg 2665
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>gb|AC148919.1| Gallus gallus BAC clone CH261-43B19 from chromosome unknown, complete
             sequence
          Length = 163278

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 162   tgaaacaattctctgacttcta 183
             ||||||||||||||||||||||
Sbjct: 52897 tgaaacaattctctgacttcta 52876
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>gb|AC142329.1| Pan troglodytes BAC clone RP43-25D8 from 11, complete sequence
          Length = 188643

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 208   agcacaaactcatgaaaatat 228
             |||||||||||||||||||||
Sbjct: 60366 agcacaaactcatgaaaatat 60346
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>dbj|D10511.2| Homo sapiens MAT gene for mitochondrial acetoacetyl-CoA thiolase,
           complete cds
          Length = 4392

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 208 agcacaaactcatgaaaatat 228
           |||||||||||||||||||||
Sbjct: 627 agcacaaactcatgaaaatat 607
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>emb|CR753890.27| Zebrafish DNA sequence from clone CH211-207D8 in linkage group 9,
            complete sequence
          Length = 201771

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 68   ggtacaacaacacatgcaaat 88
            |||||||||||||||||||||
Sbjct: 1138 ggtacaacaacacatgcaaat 1118
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>dbj|AP002433.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-144G7, complete
              sequence
          Length = 165164

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 208    agcacaaactcatgaaaatat 228
              |||||||||||||||||||||
Sbjct: 105823 agcacaaactcatgaaaatat 105803
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>emb|BX914197.15| Zebrafish DNA sequence from clone DKEYP-81F11 in linkage group 11,
              complete sequence
          Length = 198600

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    atgaaaatatgctgaatgaa 238
              ||||||||||||||||||||
Sbjct: 104691 atgaaaatatgctgaatgaa 104710
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>emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in linkage group 2,
           complete sequence
          Length = 244700

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  aacacatgcaaataagcata 95
           ||||||||||||||||||||
Sbjct: 325 aacacatgcaaataagcata 306
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>gb|AC145866.3| Pan troglodytes BAC clone RP43-21B7 from 7, complete sequence
          Length = 189814

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 198   agacagcaagagcacaaactcatg 221
             ||||||||||||||||| ||||||
Sbjct: 91746 agacagcaagagcacaagctcatg 91723
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     cagcaagagcacaaactcat 220
               ||||||||||||||||||||
Sbjct: 2367821 cagcaagagcacaaactcat 2367802
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>emb|AL159159.21| Human DNA sequence from clone RP11-88J11 on chromosome 13 Contains the
             3' end of the CDK8 gene for cyclin-dependent kinase 8,
             complete sequence
          Length = 144626

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 208   agcacaaactcatgaaaatatgct 231
             ||||||||| ||||||||||||||
Sbjct: 65285 agcacaaacccatgaaaatatgct 65308
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>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a
              novel gene, the 5' end of the TCF8 gene for transcription
              factor 8 (represses interleukin 2 expression)
              (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a
              pseudogene similar to part of serine palmitoyltransferase,
              long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1, LCB1,
              SPT1, SPTI) and two CpG islands, complete sequence
          Length = 187517

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    ctgaatgaataagttaggca 249
              ||||||||||||||||||||
Sbjct: 174428 ctgaatgaataagttaggca 174447
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>emb|CR391971.7| Zebrafish DNA sequence from clone CH211-260O6 in linkage group 21,
            complete sequence
          Length = 129478

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 219  atgaaaatatgctgaatgaa 238
            ||||||||||||||||||||
Sbjct: 2764 atgaaaatatgctgaatgaa 2745
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>emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 in linkage group 21,
             complete sequence
          Length = 147564

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   atgaaaatatgctgaatgaa 238
             ||||||||||||||||||||
Sbjct: 41288 atgaaaatatgctgaatgaa 41269
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>emb|CR548622.8| Zebrafish DNA sequence from clone DKEY-189A9 in linkage group 11,
             complete sequence
          Length = 137993

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   atgaaaatatgctgaatgaa 238
             ||||||||||||||||||||
Sbjct: 16675 atgaaaatatgctgaatgaa 16694
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>emb|CR385085.9| Zebrafish DNA sequence from clone CH211-195A16, complete sequence
          Length = 211060

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    atgaaaatatgctgaatgaa 238
              ||||||||||||||||||||
Sbjct: 156937 atgaaaatatgctgaatgaa 156956
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>emb|CR318610.8| Zebrafish DNA sequence from clone CH211-14B14 in linkage group 5,
              complete sequence
          Length = 164564

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    atgaaaatatgctgaatgaa 238
              ||||||||||||||||||||
Sbjct: 152626 atgaaaatatgctgaatgaa 152607
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>emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in linkage group 13,
              complete sequence
          Length = 166397

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    atgaaaatatgctgaatgaa 238
              ||||||||||||||||||||
Sbjct: 141164 atgaaaatatgctgaatgaa 141145
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>gb|AC120338.4| Homo sapiens X BAC RP11-791N19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 109001

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   aaaatatgctgaatgaataa 241
             ||||||||||||||||||||
Sbjct: 94435 aaaatatgctgaatgaataa 94454
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>gb|AC068305.30|AC068305 Homo sapiens 12 BAC RP11-557F20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 131811

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ctgaatgaataagttaggca 249
             ||||||||||||||||||||
Sbjct: 54484 ctgaatgaataagttaggca 54503
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>emb|BX294395.15| Zebrafish DNA sequence from clone CH211-220B11 in linkage group 5,
             complete sequence
          Length = 213232

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   atgaaaatatgctgaatgaa 238
             ||||||||||||||||||||
Sbjct: 65218 atgaaaatatgctgaatgaa 65237
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>emb|BX296526.5| Zebrafish DNA sequence from clone DKEY-229D2 in linkage group 5,
             complete sequence
          Length = 179086

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   atgaaaatatgctgaatgaa 238
             ||||||||||||||||||||
Sbjct: 19761 atgaaaatatgctgaatgaa 19742
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>emb|BX005463.5| Zebrafish DNA sequence from clone CH211-177H19 in linkage group 6,
             complete sequence
          Length = 163804

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   atgaaaatatgctgaatgaa 238
             ||||||||||||||||||||
Sbjct: 47713 atgaaaatatgctgaatgaa 47694
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>gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete sequence
          Length = 198084

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ctgaatgaataagttaggca 249
             ||||||||||||||||||||
Sbjct: 56841 ctgaatgaataagttaggca 56860
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>emb|BX649231.4| Zebrafish DNA sequence from clone DKEY-225H23 in linkage group 20,
             complete sequence
          Length = 153569

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   atgaaaatatgctgaatgaa 238
             ||||||||||||||||||||
Sbjct: 62267 atgaaaatatgctgaatgaa 62248
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>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23,
              complete sequence
          Length = 178148

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    atgaaaatatgctgaatgaa 238
              ||||||||||||||||||||
Sbjct: 129196 atgaaaatatgctgaatgaa 129177
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>gb|AC110171.29| Mus musculus chromosome 12, clone RP23-400A5, complete sequence
          Length = 188590

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 3     tacacaccactttctctttctcat 26
             |||||||||||| |||||||||||
Sbjct: 70319 tacacaccacttactctttctcat 70296
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    agcagacccagatttttacc 293
              ||||||||||||||||||||
Sbjct: 165101 agcagacccagatttttacc 165120
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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 25      atacggtgtattatacgttg 44
               ||||||||||||||||||||
Sbjct: 3003488 atacggtgtattatacgttg 3003507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,131,966
Number of Sequences: 3902068
Number of extensions: 3131966
Number of successful extensions: 65880
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65709
Number of HSP's gapped (non-prelim): 171
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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