>UN13B_HUMAN (O14795) Unc-13 homolog B (Munc13-2) (munc13)|
          Length = 1591

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 49  GTEQLSRLQQPHAADPPRSQHNKVHTAHRSHT 144
           G+ QLS L Q H  D    + + +H+ H SH+
Sbjct: 270 GSSQLSELDQYHEQDDDHRETDSIHSCHSSHS 301

>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3|
          Length = 623

 Score = 30.8 bits (68), Expect = 0.84
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 55  EQLSRLQQPHAADPPRSQHNKVHTAHRSHT 144
           +Q S+LQ PH+  PP  QH + H  H+  T
Sbjct: 406 QQHSQLQPPHSQHPPPHQHIQHHPNHQHQT 435

>NBR1_PONPY (Q5RC94) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
           protein)
          Length = 894

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 362 EMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 258
           EMGF DR+ N +LL K+  +I + V +L+     D
Sbjct: 854 EMGFCDRQLNLQLLKKHNYNILQVVTELLQLNNND 888

>UBIB_PSESM (Q87UZ0) Probable ubiquinone biosynthesis protein ubiB|
          Length = 539

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 61  LSRLQQPHAADPPRSQHNK 117
           L R+ +PHA+DPPR  H++
Sbjct: 468 LERMSRPHASDPPRPWHDR 486

>DSK2_SCHPO (Q10169) Deubiquitination-protection protein dph1|
          Length = 354

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 365 SEMGFDDRETNKELLAKNGGSIKRAVMDLIA 273
           +EMGF D E N + L ++GG+++ A+  L++
Sbjct: 322 NEMGFVDFERNVQALRRSGGNVQGAIESLLS 352

>SIN1_SCHPO (Q9P7Y9) Stress-activated map kinase-interacting protein 1|
           (SAPK-interacting protein 1)
          Length = 665

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = +1

Query: 64  SRLQQPHAADPPRSQH--------NKVHTAHRSHTNKSSQQFIGKLRDTLS 192
           +++++  AA P +S+H        NK H  H S T+  SQ+    ++DTL+
Sbjct: 386 AQIKENQAAYPFKSKHPTSIPEANNKTHIRHTSSTSSQSQKQAQDVKDTLN 436

>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
 Frame = +1

Query: 55  EQLSRLQQPHAADPPRSQ--HNKVHTAHRSHTNKSSQQFIGKL-----RDTLSRYLGIY 210
           + +S+ QQP +  PP+ Q    K   +    + +S + FIG L      D L  Y G Y
Sbjct: 124 QTMSQFQQPSSQSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKY 182

>Y3539_METJA (Q60294) Hypothetical UPF0252 protein MJECL39|
          Length = 351

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
 Frame = -1

Query: 244 ELSNTYLSISIYICLNNE-TVCPVVCL*TAVKTCWCD--FCVR-------CELYYVVTVV 95
           E SN Y  I+ +I +     + P V L       WC+  FC+        C LY+++T++
Sbjct: 51  EKSNVYYFITFFIIVGLVWAIFPEVWL-------WCEQVFCISPTIHIIICCLYFIITII 103

Query: 94  GQLRVVAVIG----LVALFLLFNYCEWK 23
             L +  V+G    L A F   + C+ K
Sbjct: 104 LFLFLCGVVGTFLHLWATFFTLSKCDSK 131

>NBR1_RAT (Q501R9) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein)
          Length = 983

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 362  EMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 258
            EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 943  EMGFCDRQLNLRLLRKHNHNILQVVTELLQVNNND 977

>NBR1_HUMAN (Q14596) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2) (1A1-3B)
          Length = 966

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 362  EMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 258
            EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 926  EMGFCDRQLNLRLLKKHNYNILQVVTELLQLNNND 960

>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1|
            protein) (Membrane component, chromosome 17, surface
            marker 2)
          Length = 988

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 362  EMGFDDRETNKELLAKNGGSIKRAVMDLIAREKKD 258
            EMGF DR+ N  LL K+  +I + V +L+     D
Sbjct: 948  EMGFCDRQLNLRLLRKHNYNILQVVTELLQVNNND 982

>KNOX3_MAIZE (P56661) Homeobox protein knotted-1-like 3 (Fragment)|
          Length = 88

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 350 DDRETNKELLAKNGGSIKRAVMDLIAREKKDK 255
           DD+E  K+LL K  G +     +L  + KKDK
Sbjct: 1   DDKELKKQLLRKYSGCLGNLRKELCKKRKKDK 32

>PMEU1_LYCES (Q43143) Pectinesterase U1 precursor (EC 3.1.1.11) (Pectin|
           methylesterase) (PE)
          Length = 583

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 139 DFCVRCELYYVVTVVGQLRVVAVIGLVA 56
           DFC R +  Y+  V   L V AVIG+VA
Sbjct: 13  DFCKRKKKIYLAIVASVLLVAAVIGVVA 40

>SNF1_CANAL (P52497) Carbon catabolite derepressing protein kinase (EC|
           2.7.11.1)
          Length = 620

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 61  LSRLQQPHA-ADPPRSQHNKVHTAHRSHTNKSSQQ 162
           +S   QP A AD  + QHN  H  H  H N++  Q
Sbjct: 1   MSEQAQPQASADQQQHQHNHHHHHHHHHHNENQSQ 35

>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3|
          Length = 622

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 55  EQLSRLQQPHAADPPRSQHNKVHTAHRSHT 144
           +Q S+LQ PH   P   QH + H  H+  T
Sbjct: 405 QQHSQLQSPHPQHPSPHQHIQHHPNHQHQT 434

>POLG_HCVT5 (O92529) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3018

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 19   RSSTHNS*IVGTEQLSRLQQPHAADPPRSQHNKVHTAHRSHTNKSSQQFIGKLRDTL 189
            R+ST ++ ++ TE+   L  PH+A   RS++       RSHT+K+ +       D L
Sbjct: 2501 RASTVHARLLSTEEACSLTPPHSA---RSRYGYGARDVRSHTSKAVKHIDSVWEDLL 2554

>FBW1A_HUMAN (Q9Y297) F-box/WD-repeat protein 1A (F-box and WD-repeats protein|
           beta-TrCP) (E3RSIkappaB) (pIkappaBalpha-E3 receptor
           subunit)
          Length = 605

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/45 (42%), Positives = 23/45 (51%)
 Frame = -1

Query: 274 PGRRRTSEDRELSNTYLSISIYICLNNETVCPVVCL*TAVKTCWC 140
           P R+   E   L  TY S +  +CLN ETVC      TA+KT  C
Sbjct: 65  PPRKIIPEKNSLRQTYNSCA-RLCLNQETVCLAS---TAMKTENC 105

>STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 129

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
 Frame = +1

Query: 16  HRSSTHNS*IVGTEQLSRLQQPHAADPPRSQHNKVH--------TAHRSHTNKSSQQFIG 171
           H SS H S           Q PH   PPR Q +  H        T H     K+ + F G
Sbjct: 56  HSSSGHQS-----------QSPHPTLPPRHQKHTRHSHHCPPRPTTHSCSYPKNRKNFEG 104

Query: 172 KL--RDTLSRYLGIYK 213
           K+  R  + R   +YK
Sbjct: 105 KVNKRKVVKRSQQVYK 120

>UBQL1_RAT (Q9JJP9) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 365 SEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 267
           S MGF +RE N + L   GG I  A+  L+  +
Sbjct: 548 SAMGFLNREANLQALIATGGDINAAIERLLGSQ 580

>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 365 SEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 267
           S MGF +RE N + L   GG I  A+  L+  +
Sbjct: 548 SAMGFLNREANLQALIATGGDINAAIERLLGSQ 580

>UBQL1_HUMAN (Q9UMX0) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1) (hPLIC-1)
          Length = 589

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 365 SEMGFDDRETNKELLAKNGGSIKRAVMDLIARE 267
           S MGF +RE N + L   GG I  A+  L+  +
Sbjct: 555 SAMGFLNREANLQALIATGGDINAAIERLLGSQ 587


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,399,755
Number of Sequences: 219361
Number of extensions: 896528
Number of successful extensions: 2564
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2562
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)