ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl22e10 |
|---|---|
| Clone Library Name | barley_pub |
>SMBT1_HUMAN (Q9UHJ3) Scm-like with four MBT domains protein 1 (Renal ubiquitous| protein 1) Length = 866 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Frame = +2 Query: 179 TRTSYHHYRCFDVRPFPIFVKMMKTQASAST--QRRWIQVVAETCHSKLCLRLDHHG 343 T Y ++ D R F MK + + T + W+ V TC L LR D +G Sbjct: 32 TAVPYGSFKHVDTRLQNGFAPGMKLEVAVRTDPETYWVATVITTCEQLLLLRYDGYG 88
>R1AB_CVMJH (P19751) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p28; p65; p210 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2 (p44); 3C-like proteinase Length = 7180 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = -3 Query: 335 GPIASRVLNGMFLPRLVSTCAAWRLMPVFS 246 G + SRVL +F+ L+ W LMP ++ Sbjct: 2840 GAVFSRVLQWLFVANLICFIVLWALMPTYA 2869
>FAM5A_HUMAN (O60477) Protein FAM5A precursor (Deleted in bladder cancer 1| protein) Length = 761 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = +3 Query: 282 GYKSWQKHAIQNSAC-DWTIMV 344 GY W+K +QNS C +WT+++ Sbjct: 583 GYPRWEKIRLQNSQCYNWTLLL 604
>FAM5A_CHICK (Q7ZZR3) Protein FAM5A precursor (BMP/retinoic acid-inducible| neural-specific protein 1) Length = 761 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = +3 Query: 282 GYKSWQKHAIQNSAC-DWTIMV 344 GY W+K +QNS C +WT+++ Sbjct: 583 GYPRWEKIRLQNSQCYNWTLLL 604
>FAM5A_BOVIN (Q5E9L2) Protein FAM5A precursor| Length = 761 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = +3 Query: 282 GYKSWQKHAIQNSAC-DWTIMV 344 GY W+K +QNS C +WT+++ Sbjct: 583 GYPRWEKIRLQNSQCYNWTLLL 604
>FAM5A_RAT (Q925T8) Protein FAM5A precursor (Deleted in bladder cancer 1| protein homolog) (BMP/retinoic acid-inducible neural-specific protein 1) Length = 760 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = +3 Query: 282 GYKSWQKHAIQNSAC-DWTIMV 344 GY W+K +QNS C +WT+++ Sbjct: 583 GYPRWEKIRLQNSQCYNWTLLL 604
>FAM5A_MOUSE (Q920P3) Protein FAM5A precursor (Deleted in bladder cancer 1| protein homolog) (BMP/retinoic acid-inducible neural-specific protein 1) Length = 760 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%) Frame = +3 Query: 282 GYKSWQKHAIQNSAC-DWTIMV 344 GY W+K +QNS C +WT+++ Sbjct: 583 GYPRWEKIRLQNSQCYNWTLLL 604
>HYPF_RHILV (P28156) Carbamoyltransferase hypF (EC 2.1.3.-) (Carbamoyl| phosphate-converting enzyme hypF) ([NiFe]-hydrogenase maturation factor hypF) (Hydrogenase maturation protein hypF) Length = 759 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +3 Query: 129 GVIHPGSLALGLLRI*APVHHITTTGALTSDP 224 G+I PG +GL+ APVHH+ S P Sbjct: 289 GLIAPGLTRVGLMLAYAPVHHLLLDELSRSSP 320
>MQO2_STAAW (Q8NUM4) Probable malate:quinone oxidoreductase 2 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 2) (MQO 2) Length = 498 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%) Frame = -1 Query: 118 QGCV----IYFPEDRNVHWRLYTA*K 53 +GC+ ++PE RN W+LYTA K Sbjct: 371 EGCMNHLRTFYPEARNEDWQLYTAGK 396
>MQO2_STAAS (Q6G669) Probable malate:quinone oxidoreductase 2 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 2) (MQO 2) Length = 498 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%) Frame = -1 Query: 118 QGCV----IYFPEDRNVHWRLYTA*K 53 +GC+ ++PE RN W+LYTA K Sbjct: 371 EGCMNHLRTFYPEARNEDWQLYTAGK 396
>MQO2_STAAR (Q6GDJ6) Probable malate:quinone oxidoreductase 2 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 2) (MQO 2) Length = 498 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%) Frame = -1 Query: 118 QGCV----IYFPEDRNVHWRLYTA*K 53 +GC+ ++PE RN W+LYTA K Sbjct: 371 EGCMNHLRTFYPEARNEDWQLYTAGK 396
>MQO2_STAAN (P99115) Probable malate:quinone oxidoreductase 2 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 2) (MQO 2) Length = 498 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%) Frame = -1 Query: 118 QGCV----IYFPEDRNVHWRLYTA*K 53 +GC+ ++PE RN W+LYTA K Sbjct: 371 EGCMNHLRTFYPEARNEDWQLYTAGK 396
>MQO2_STAAM (P65424) Probable malate:quinone oxidoreductase 2 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 2) (MQO 2) Length = 498 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%) Frame = -1 Query: 118 QGCV----IYFPEDRNVHWRLYTA*K 53 +GC+ ++PE RN W+LYTA K Sbjct: 371 EGCMNHLRTFYPEARNEDWQLYTAGK 396
>MQO2_STAAC (Q5HCU5) Probable malate:quinone oxidoreductase 2 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 2) (MQO 2) Length = 498 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 4/26 (15%) Frame = -1 Query: 118 QGCV----IYFPEDRNVHWRLYTA*K 53 +GC+ ++PE RN W+LYTA K Sbjct: 371 EGCMNHLRTFYPEARNEDWQLYTAGK 396 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,445,482 Number of Sequences: 219361 Number of extensions: 1085908 Number of successful extensions: 2184 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2184 length of database: 80,573,946 effective HSP length: 93 effective length of database: 60,173,373 effective search space used: 1444160952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
