ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 226 1e-56
2gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 224 4e-56
3emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 92 4e-16
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 92 4e-16
5dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 4e-16
6dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 4e-16
7emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 92 4e-16
8emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 ... 42 0.35
9emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo... 40 1.4
10emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in... 40 1.4
11emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in... 40 1.4
12emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, ... 40 1.4
13emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in ... 40 1.4
14emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 i... 40 1.4
15emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in ... 40 1.4
16emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in... 40 1.4
17gb|AC164303.2| Mus musculus BAC clone RP24-530J21 from chromosom... 38 5.4
18gb|AC163008.9| Mus musculus chromosome 15, clone RP23-105P11, co... 38 5.4
19gb|AC145923.3| Pan troglodytes BAC clone RP43-10M24 from 7, comp... 38 5.4
20gb|AC132902.9| Mus musculus chromosome 13, clone RP24-286O14, co... 38 5.4
21gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 38 5.4
22gb|AY267749.1| Mytilus edulis histone H3 (H3) gene, complete cds 38 5.4
23emb|CR391904.14| Zebrafish DNA sequence from clone DKEY-165J6 in... 38 5.4
24gb|AC121841.3| Mus musculus BAC clone RP24-80D5 from chromosome ... 38 5.4
25gb|AC101996.9| Mus musculus chromosome 15, clone RP24-441N7, com... 38 5.4
26gb|AC159971.4| Mus musculus chromosome 5, clone RP23-263G19, com... 38 5.4
27emb|BX465864.12| Zebrafish DNA sequence from clone DKEY-148F24 i... 38 5.4
28emb|CR857577.1| Pongo pygmaeus mRNA; cDNA DKFZp469K2211 (from cl... 38 5.4
29emb|CR388098.7| Zebrafish DNA sequence from clone DKEY-12J14 in ... 38 5.4
30emb|AL928657.21| Zebrafish DNA sequence from clone CH211-194I10 ... 38 5.4
31dbj|AK092048.1| Homo sapiens cDNA FLJ34729 fis, clone MESAN2006401 38 5.4
32dbj|AK055040.1| Homo sapiens cDNA FLJ30478 fis, clone BRAWH1000167 38 5.4
33gb|AC099493.2| Homo sapiens chromosome 5 clone RP11-10I19, compl... 38 5.4
34gb|AC022073.13| Homo sapiens chr12 BAC RP11-674J14 (Roswell Park... 38 5.4
35emb|BX470158.9| Zebrafish DNA sequence from clone CH211-113P5 in... 38 5.4
36emb|BX664745.13| Zebrafish DNA sequence from clone DKEY-242A8 in... 38 5.4
37gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 38 5.4
38emb|BX324205.5| Zebrafish DNA sequence from clone CH211-10K1 in ... 38 5.4
39gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromoso... 38 5.4
40gb|AC093522.4| Homo sapiens chromosome 16 clone RP11-172I18, com... 38 5.4
41gb|AC108733.4| Homo sapiens 3 BAC RP11-789F5 (Roswell Park Cance... 38 5.4
42gb|AC062020.5| Homo sapiens BAC clone RP11-154O23 from 2, comple... 38 5.4
43emb|BX571811.5| Zebrafish DNA sequence from clone CH211-194P6, c... 38 5.4
44gb|AC139063.11| Mus musculus chromosome 7, clone RP23-73F23, com... 38 5.4
45gb|AC150470.3| Macropus eugenii clone ME_KBa-588N19, complete se... 38 5.4
46dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 38 5.4
47emb|AL845168.5| Zebrafish DNA sequence from clone DKEY-91M11, co... 38 5.4
48gb|AC074313.29| Mus musculus strain C57BL/6J clone rp23-412j23 m... 38 5.4
49gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, compl... 38 5.4
50gb|AC006145.2|AC006145 Homo sapiens PAC clone RP4-560O14 from 7q... 38 5.4
51emb|BX005204.7| Zebrafish DNA sequence from clone CH211-151G17, ... 38 5.4
52emb|BX284688.13| Zebrafish DNA sequence from clone DKEY-71K16 in... 38 5.4
53emb|AL929115.9| Zebrafish DNA sequence from clone CH211-146M13 i... 38 5.4
54emb|AL935205.13| Zebrafish DNA sequence from clone CH211-233F15,... 38 5.4
55gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay... 38 5.4
56emb|BX088545.7| Zebrafish DNA sequence from clone DKEY-60G19 in ... 38 5.4
57emb|AL833141.1|HSM804452 Homo sapiens mRNA; cDNA DKFZp313C0240 (... 38 5.4
58emb|CR384057.25| Zebrafish DNA sequence from clone CH211-243K10 ... 38 5.4
59emb|AL844522.7| Zebrafish DNA sequence from clone DKEY-113M9, co... 38 5.4
60gb|AC122042.6| Mus musculus BAC clone RP24-446B12 from chromosom... 38 5.4 
>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit mRNA,
            complete cds
          Length = 2887

 Score =  226 bits (114), Expect = 1e-56
 Identities = 117/118 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    aatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccgacagaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2857 aatcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccgacagaa 2798

                                                                      
Query: 61   tactccaaaaccacagtacattgttacaaattgggtaagaactgaaaagaaataataa 118
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2797 tactccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataataa 2740
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>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
            sequence
          Length = 2863

 Score =  224 bits (113), Expect = 4e-56
 Identities = 116/117 (99%)
 Strand = Plus / Minus

                                                                        
Query: 2    atcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccgacagaat 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2852 atcttagattcagttttcgactcctacaatgctgacacgatatattgtaaccgacagaat 2793

                                                                     
Query: 62   actccaaaaccacagtacattgttacaaattgggtaagaactgaaaagaaataataa 118
            |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2792 actccaaaaccacagtacattgttacaaattgtgtaagaactgaaaagaaataataa 2736
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
             complete sequence
          Length = 173171

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 34    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 92
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 42105 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 42164

                                       
Query: 93    gggtaagaactgaaaagaaataataa 118
             | ||| | || |||||||| ||||||
Sbjct: 42165 gtgtacgcacagaaaagaactaataa 42190
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                            
Query: 34       tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 92
                |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 24921520 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 24921579

                                          
Query: 93       gggtaagaactgaaaagaaataataa 118
                | ||| | || |||||||| ||||||
Sbjct: 24921580 gtgtacgcacagaaaagaactaataa 24921605
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>dbj|AK065553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027N14, full
            insert sequence
          Length = 2907

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 34   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 92
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 2795 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 2736

                                      
Query: 93   gggtaagaactgaaaagaaataataa 118
            | ||| | || |||||||| ||||||
Sbjct: 2735 gtgtacgcacagaaaagaactaataa 2710
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>dbj|AK060761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A02, full
            insert sequence
          Length = 1712

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                        
Query: 34   tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 92
            |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 1701 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 1642

                                      
Query: 93   gggtaagaactgaaaagaaataataa 118
            | ||| | || |||||||| ||||||
Sbjct: 1641 gtgtacgcacagaaaagaactaataa 1616
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
             sequence
          Length = 148644

 Score = 91.7 bits (46), Expect = 4e-16
 Identities = 77/86 (89%), Gaps = 1/86 (1%)
 Strand = Plus / Plus

                                                                         
Query: 34    tgacacgatatattgtaa-ccgacagaatactccaaaaccacagtacattgttacaaatt 92
             |||||||||||||||||| || ||||||||||||||||||| |||||||||||||||| |
Sbjct: 49634 tgacacgatatattgtaaaccaacagaatactccaaaaccatagtacattgttacaaaat 49693

                                       
Query: 93    gggtaagaactgaaaagaaataataa 118
             | ||| | || |||||||| ||||||
Sbjct: 49694 gtgtacgcacagaaaagaactaataa 49719
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>emb|BX927394.14| Zebrafish DNA sequence from clone CH211-262I10 in linkage group 21,
              complete sequence
          Length = 164899

 Score = 42.1 bits (21), Expect = 0.35
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 25     ctacaatgctgacacgatatattgt 49
              |||||||||||| ||||||||||||
Sbjct: 122731 ctacaatgctgaaacgatatattgt 122707
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>emb|AJ400899.1|PSA400899 Pisum sativum partial kdsA gene for Kdo-8-phosphate synthase, exons
           1-4
          Length = 1812

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  taagaactgaaaagaaataa 115
           ||||||||||||||||||||
Sbjct: 639 taagaactgaaaagaaataa 620
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>emb|CR855858.5| Zebrafish DNA sequence from clone CH211-113H5 in linkage group 24,
             complete sequence
          Length = 152666

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atgctgacacgatatattgt 49
             ||||||||||||||||||||
Sbjct: 54458 atgctgacacgatatattgt 54439
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>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3,
              complete sequence
          Length = 241961

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     atgctgacacgatatattgt 49
              ||||||||||||||||||||
Sbjct: 198757 atgctgacacgatatattgt 198776
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>emb|AL935194.4| Zebrafish DNA sequence from clone CH211-237E12, complete sequence
          Length = 145569

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atgctgacacgatatattgt 49
             ||||||||||||||||||||
Sbjct: 50947 atgctgacacgatatattgt 50928
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>emb|BX248390.7| Zebrafish DNA sequence from clone DKEY-34F16 in linkage group 20,
             complete sequence
          Length = 239874

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atgctgacacgatatattgt 49
             ||||||||||||||||||||
Sbjct: 46843 atgctgacacgatatattgt 46824
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>emb|BX640497.11| Zebrafish DNA sequence from clone CH211-108O9 in linkage group 20,
             complete sequence
          Length = 189717

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atgctgacacgatatattgt 49
             ||||||||||||||||||||
Sbjct: 78894 atgctgacacgatatattgt 78875
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>emb|BX470128.8| Zebrafish DNA sequence from clone DKEY-19F21 in linkage group 20,
             complete sequence
          Length = 209360

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    atgctgacacgatatattgt 49
             ||||||||||||||||||||
Sbjct: 38990 atgctgacacgatatattgt 38971
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>emb|AL954703.8| Zebrafish DNA sequence from clone CH211-51I10 in linkage group 1,
              complete sequence
          Length = 184073

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     atgctgacacgatatattgt 49
              ||||||||||||||||||||
Sbjct: 135077 atgctgacacgatatattgt 135096
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>gb|AC164303.2| Mus musculus BAC clone RP24-530J21 from chromosome 14, complete
             sequence
          Length = 164905

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 59    aatactccaaaaccacagt 77
             |||||||||||||||||||
Sbjct: 66373 aatactccaaaaccacagt 66391
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>gb|AC163008.9| Mus musculus chromosome 15, clone RP23-105P11, complete sequence
          Length = 211071

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 69   aaccacagtacattgttacaaat 91
            ||||| |||||||||||||||||
Sbjct: 9388 aaccagagtacattgttacaaat 9410
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>gb|AC145923.3| Pan troglodytes BAC clone RP43-10M24 from 7, complete sequence
          Length = 181799

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 84   ttacaaattgggtaagaac 102
            |||||||||||||||||||
Sbjct: 4053 ttacaaattgggtaagaac 4035
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>gb|AC132902.9| Mus musculus chromosome 13, clone RP24-286O14, complete sequence
          Length = 160759

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     tcttagattcagttttcga 21
             |||||||||||||||||||
Sbjct: 99803 tcttagattcagttttcga 99821
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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 94     ggtaagaactgaaaagaaa 112
              |||||||||||||||||||
Sbjct: 640563 ggtaagaactgaaaagaaa 640545
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>gb|AY267749.1| Mytilus edulis histone H3 (H3) gene, complete cds
          Length = 907

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 53  cgacagaatactccaaaac 71
           |||||||||||||||||||
Sbjct: 239 cgacagaatactccaaaac 221
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>emb|CR391904.14| Zebrafish DNA sequence from clone DKEY-165J6 in linkage group 3,
             complete sequence
          Length = 147391

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 27    acaatgctgacacgatatattgt 49
             |||||||||| ||||||||||||
Sbjct: 52385 acaatgctgaaacgatatattgt 52363
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>gb|AC121841.3| Mus musculus BAC clone RP24-80D5 from chromosome 5, complete sequence
          Length = 199487

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 96     taagaactgaaaagaaataataa 118
              ||||||||||| |||||||||||
Sbjct: 120867 taagaactgaatagaaataataa 120889
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>gb|AC101996.9| Mus musculus chromosome 15, clone RP24-441N7, complete sequence
          Length = 164681

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 69    aaccacagtacattgttacaaat 91
             ||||| |||||||||||||||||
Sbjct: 12053 aaccagagtacattgttacaaat 12031
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>gb|AC159971.4| Mus musculus chromosome 5, clone RP23-263G19, complete sequence
          Length = 163375

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 96    taagaactgaaaagaaataataa 118
             ||||||||||| |||||||||||
Sbjct: 26860 taagaactgaatagaaataataa 26882
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>emb|BX465864.12| Zebrafish DNA sequence from clone DKEY-148F24 in linkage group 23,
              complete sequence
          Length = 128483

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 100    aactgaaaagaaataataa 118
              |||||||||||||||||||
Sbjct: 103740 aactgaaaagaaataataa 103758
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>emb|CR857577.1| Pongo pygmaeus mRNA; cDNA DKFZp469K2211 (from clone DKFZp469K2211)
          Length = 6323

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 84   ttacaaattgggtaagaac 102
            |||||||||||||||||||
Sbjct: 5769 ttacaaattgggtaagaac 5787
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>emb|CR388098.7| Zebrafish DNA sequence from clone DKEY-12J14 in linkage group 13,
             complete sequence
          Length = 192818

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 27    acaatgctgacacgatatattgt 49
             |||||||||| ||||||||||||
Sbjct: 18492 acaatgctgaaacgatatattgt 18514
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>emb|AL928657.21| Zebrafish DNA sequence from clone CH211-194I10 in linkage group 3,
             complete sequence
          Length = 187734

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 27    acaatgctgacacgatatattgt 49
             |||||||||| ||||||||||||
Sbjct: 49113 acaatgctgaaacgatatattgt 49135
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>dbj|AK092048.1| Homo sapiens cDNA FLJ34729 fis, clone MESAN2006401
          Length = 2334

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 84   ttacaaattgggtaagaac 102
            |||||||||||||||||||
Sbjct: 1785 ttacaaattgggtaagaac 1803
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>dbj|AK055040.1| Homo sapiens cDNA FLJ30478 fis, clone BRAWH1000167
          Length = 2045

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 84  ttacaaattgggtaagaac 102
           |||||||||||||||||||
Sbjct: 605 ttacaaattgggtaagaac 623
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>gb|AC099493.2| Homo sapiens chromosome 5 clone RP11-10I19, complete sequence
          Length = 162705

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    aagaactgaaaagaaataa 115
             |||||||||||||||||||
Sbjct: 87985 aagaactgaaaagaaataa 87967
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>gb|AC022073.13| Homo sapiens chr12 BAC RP11-674J14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 182247

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    aagaactgaaaagaaataa 115
             |||||||||||||||||||
Sbjct: 98773 aagaactgaaaagaaataa 98755
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>emb|BX470158.9| Zebrafish DNA sequence from clone CH211-113P5 in linkage group 8,
             complete sequence
          Length = 119483

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 28    caatgctgacacgatatattgta 50
             ||||||||| |||||||||||||
Sbjct: 75771 caatgctgaaacgatatattgta 75793
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>emb|BX664745.13| Zebrafish DNA sequence from clone DKEY-242A8 in linkage group 23,
              complete sequence
          Length = 261934

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 28     caatgctgacacgatatattgta 50
              ||||||||| |||||||||||||
Sbjct: 184614 caatgctgaaacgatatattgta 184636
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 100     aactgaaaagaaataataa 118
               |||||||||||||||||||
Sbjct: 1640360 aactgaaaagaaataataa 1640342
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>emb|BX324205.5| Zebrafish DNA sequence from clone CH211-10K1 in linkage group 14,
              complete sequence
          Length = 168546

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 28     caatgctgacacgatatattgta 50
              ||||||||| |||||||||||||
Sbjct: 162697 caatgctgaaacgatatattgta 162675
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>gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromosome 7, complete sequence
          Length = 212458

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 84     ttacaaattgggtaagaac 102
              |||||||||||||||||||
Sbjct: 146790 ttacaaattgggtaagaac 146808
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>gb|AC093522.4| Homo sapiens chromosome 16 clone RP11-172I18, complete sequence
          Length = 162017

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 98    agaactgaaaagaaataat 116
             |||||||||||||||||||
Sbjct: 94991 agaactgaaaagaaataat 95009
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>gb|AC108733.4| Homo sapiens 3 BAC RP11-789F5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 171184

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 100    aactgaaaagaaataataa 118
              |||||||||||||||||||
Sbjct: 137240 aactgaaaagaaataataa 137222
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>gb|AC062020.5| Homo sapiens BAC clone RP11-154O23 from 2, complete sequence
          Length = 170197

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    aagaactgaaaagaaataa 115
             |||||||||||||||||||
Sbjct: 22450 aagaactgaaaagaaataa 22468
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>emb|BX571811.5| Zebrafish DNA sequence from clone CH211-194P6, complete sequence
          Length = 219044

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 27    acaatgctgacacgatatattgt 49
             |||||||||| ||||||||||||
Sbjct: 17493 acaatgctgaaacgatatattgt 17471
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>gb|AC139063.11| Mus musculus chromosome 7, clone RP23-73F23, complete sequence
          Length = 202863

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 3      tcttagattcagttttcga 21
              |||||||||||||||||||
Sbjct: 161655 tcttagattcagttttcga 161673
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>gb|AC150470.3| Macropus eugenii clone ME_KBa-588N19, complete sequence
          Length = 83610

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 94    ggtaagaactgaaaagaaa 112
             |||||||||||||||||||
Sbjct: 77179 ggtaagaactgaaaagaaa 77161
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 96     taagaactgaaaagaaataataa 118
              |||||||| ||||||||||||||
Sbjct: 183747 taagaacttaaaagaaataataa 183725
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>emb|AL845168.5| Zebrafish DNA sequence from clone DKEY-91M11, complete sequence
          Length = 198627

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 28     caatgctgacacgatatattgta 50
              ||||||||| |||||||||||||
Sbjct: 112377 caatgctgaaacgatatattgta 112399
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>gb|AC074313.29| Mus musculus strain C57BL/6J clone rp23-412j23 map 7, complete sequence
          Length = 199260

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     tcttagattcagttttcga 21
             |||||||||||||||||||
Sbjct: 50981 tcttagattcagttttcga 50963
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>gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, complete sequence
          Length = 233984

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      tcttagattcagttttcga 21
              |||||||||||||||||||
Sbjct: 205252 tcttagattcagttttcga 205234
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>gb|AC006145.2|AC006145 Homo sapiens PAC clone RP4-560O14 from 7q21.1-q21.2, complete sequence
          Length = 144659

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 84    ttacaaattgggtaagaac 102
             |||||||||||||||||||
Sbjct: 58362 ttacaaattgggtaagaac 58344
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>emb|BX005204.7| Zebrafish DNA sequence from clone CH211-151G17, complete sequence
          Length = 146297

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 27    acaatgctgacacgatatattgt 49
             |||||||||| ||||||||||||
Sbjct: 89764 acaatgctgaaacgatatattgt 89742
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>emb|BX284688.13| Zebrafish DNA sequence from clone DKEY-71K16 in linkage group 25,
              complete sequence
          Length = 236784

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 27     acaatgctgacacgatatattgt 49
              |||||||||| ||||||||||||
Sbjct: 183305 acaatgctgaaacgatatattgt 183327
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>emb|AL929115.9| Zebrafish DNA sequence from clone CH211-146M13 in linkage group 7,
             complete sequence
          Length = 148315

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 28    caatgctgacacgatatattgta 50
             ||||||||| |||||||||||||
Sbjct: 96191 caatgctgaaacgatatattgta 96213
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>emb|AL935205.13| Zebrafish DNA sequence from clone CH211-233F15, complete sequence
          Length = 150641

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 100    aactgaaaagaaataataa 118
              |||||||||||||||||||
Sbjct: 106236 aactgaaaagaaataataa 106254
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>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 70     accacagtacattgttacaaatt 92
              ||||||||||| |||||||||||
Sbjct: 134179 accacagtacagtgttacaaatt 134201
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>emb|BX088545.7| Zebrafish DNA sequence from clone DKEY-60G19 in linkage group 17,
             complete sequence
          Length = 156881

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 28    caatgctgacacgatatattgta 50
             ||||||||| |||||||||||||
Sbjct: 58368 caatgctgaaacgatatattgta 58390
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>emb|AL833141.1|HSM804452 Homo sapiens mRNA; cDNA DKFZp313C0240 (from clone DKFZp313C0240)
          Length = 1857

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 84  ttacaaattgggtaagaac 102
           |||||||||||||||||||
Sbjct: 400 ttacaaattgggtaagaac 418
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>emb|CR384057.25| Zebrafish DNA sequence from clone CH211-243K10 in linkage group 17,
             complete sequence
          Length = 154493

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 28    caatgctgacacgatatattgta 50
             ||||||||| |||||||||||||
Sbjct: 52987 caatgctgaaacgatatattgta 52965
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>emb|AL844522.7| Zebrafish DNA sequence from clone DKEY-113M9, complete sequence
          Length = 193193

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 27    acaatgctgacacgatatattgt 49
             |||||||||| ||||||||||||
Sbjct: 16095 acaatgctgaaacgatatattgt 16073
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>gb|AC122042.6| Mus musculus BAC clone RP24-446B12 from chromosome 6, complete sequence
          Length = 191132

 Score = 38.2 bits (19), Expect = 5.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     tcttagattcagttttcga 21
             |||||||||||||||||||
Sbjct: 93811 tcttagattcagttttcga 93793


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,251,434
Number of Sequences: 3902068
Number of extensions: 1251434
Number of successful extensions: 93996
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93787
Number of HSP's gapped (non-prelim): 204
length of query: 118
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 97
effective length of database: 17,151,101,840
effective search space: 1663656878480
effective search space used: 1663656878480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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