Clone Name | rbastl22d07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_626340.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd2_1130), partial mRNA Length = 2046 Score = 46.1 bits (23), Expect = 0.083 Identities = 26/27 (96%) Strand = Plus / Plus Query: 78 agctaattatctcaaatacattacaac 104 |||||||||||||||||||||| |||| Sbjct: 923 agctaattatctcaaatacatttcaac 949
>gb|AC136506.10| Medicago truncatula clone mth2-33c8, complete sequence Length = 135457 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 gttgtgttcaaaataactaaa 23 ||||||||||||||||||||| Sbjct: 92768 gttgtgttcaaaataactaaa 92788
>emb|AL773538.7| Mouse DNA sequence from clone RP23-14I24 on chromosome 2, complete sequence Length = 178544 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 254 gtaagttgtaactattaaata 274 ||||||||||||||||||||| Sbjct: 32643 gtaagttgtaactattaaata 32663
>gb|AC159238.2| Mus musculus BAC clone RP24-477O8 from chromosome 12, complete sequence Length = 176407 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 ttgatcatatatgctgactg 237 |||||||||||||||||||| Sbjct: 127799 ttgatcatatatgctgactg 127818
>gb|AC122190.4| Mus musculus BAC clone RP23-41J14 from 12, complete sequence Length = 179390 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 atagtaaggttgtaacattt 354 |||||||||||||||||||| Sbjct: 66111 atagtaaggttgtaacattt 66130
>emb|CR955009.1| Medicago truncatula chromosome 5 clone mth2-38i20, COMPLETE SEQUENCE Length = 123473 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 caaagatctacaaaggcatataac 302 ||||| |||||||||||||||||| Sbjct: 3883 caaagttctacaaaggcatataac 3860
>gb|AC121235.20| Medicago truncatula clone mth2-21k24, complete sequence Length = 116205 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 tcaaatacattacaacctag 108 |||||||||||||||||||| Sbjct: 29046 tcaaatacattacaacctag 29065
>gb|AC151740.21| Medicago truncatula clone mth2-82n16, complete sequence Length = 131700 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 caagttcatgtatgaacagc 80 |||||||||||||||||||| Sbjct: 72067 caagttcatgtatgaacagc 72086
>gb|AC146971.16| Medicago truncatula clone mth2-128d1, complete sequence Length = 125569 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 caaagatctacaaaggcatataac 302 ||||| |||||||||||||||||| Sbjct: 123297 caaagttctacaaaggcatataac 123274
>emb|BX908776.14| Zebrafish DNA sequence from clone DKEY-88E12 in linkage group 3, complete sequence Length = 249946 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 tacattacaacctagaacat 113 |||||||||||||||||||| Sbjct: 154372 tacattacaacctagaacat 154391
>gb|AC107626.2| Homo sapiens chromosome 3 clone RP11-1008M1, complete sequence Length = 179484 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 agttcatgtatgaacagcta 82 |||||||||||||||||||| Sbjct: 161081 agttcatgtatgaacagcta 161100
>emb|AL929327.5| Zebrafish DNA sequence from clone CH211-151O20, complete sequence Length = 145366 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 tacattacaacctagaacat 113 |||||||||||||||||||| Sbjct: 80096 tacattacaacctagaacat 80115
>dbj|AB019232.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIL23 Length = 80818 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 aataccctcgtaagttgtaactat 268 |||||||| ||||||||||||||| Sbjct: 63492 aatacccttgtaagttgtaactat 63515
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaaataactaaagcgatttt 31 |||||||||||||||||||| Sbjct: 343794 aaaataactaaagcgatttt 343813
>gb|AC163357.5| Mus musculus BAC clone RP23-3K10 from chromosome 12, complete sequence Length = 236266 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 atagtaaggttgtaacattt 354 |||||||||||||||||||| Sbjct: 55668 atagtaaggttgtaacattt 55649 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,032,629 Number of Sequences: 3902068 Number of extensions: 3032629 Number of successful extensions: 58373 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58335 Number of HSP's gapped (non-prelim): 38 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)