ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl22c11 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 93.2 bits (230), Expect = 2e-19 Identities = 44/57 (77%), Positives = 48/57 (84%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +L IE +VV MN DP+LKNR GPAKFPYMLLYPNTSDH G A GLTA+GIPNSISI Sbjct: 806 RLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 84.0 bits (206), Expect = 1e-16 Identities = 41/57 (71%), Positives = 46/57 (80%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +L IE +VV MN D LKNR GPA+FPYMLLYPNTSD TG A G+TA+GIPNSISI Sbjct: 810 RLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 83.2 bits (204), Expect = 2e-16 Identities = 39/57 (68%), Positives = 46/57 (80%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +L IE +V+ MN DP LKNR GPA FPY L++PNTSD+ G AEG+TARGIPNSISI Sbjct: 807 QLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 82.4 bits (202), Expect = 4e-16 Identities = 40/57 (70%), Positives = 43/57 (75%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +L IE +VVAMN DP KNR GP FPY LLYPNTSD G A GL+ARGIPNSISI Sbjct: 814 RLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 70.5 bits (171), Expect = 2e-12 Identities = 36/58 (62%), Positives = 42/58 (72%), Gaps = 1/58 (1%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQ-AEGLTARGIPNSISI 256 +L IE ++ MN + LKNR GP K PYMLLYPNTSD T + +GLTA GIPNSISI Sbjct: 820 RLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 65.5 bits (158), Expect = 5e-11 Identities = 34/57 (59%), Positives = 40/57 (70%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KLE IEK+++ N D L+NR GPAK PY LLYP++ EGLT RGIPNSISI Sbjct: 803 KLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 63.5 bits (153), Expect = 2e-10 Identities = 33/57 (57%), Positives = 38/57 (66%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KL GIE ++ A NSDP L+NRTGP + PY LL H EGLT +GIPNSISI Sbjct: 814 KLTGIEGKINARNSDPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 60.5 bits (145), Expect = 2e-09 Identities = 31/57 (54%), Positives = 38/57 (66%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KL IE+++ N+D L+NR GP K PY LLYP++ EGLT RGIPNSISI Sbjct: 816 KLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 60.1 bits (144), Expect = 2e-09 Identities = 31/57 (54%), Positives = 39/57 (68%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KL IEK++ N+D +L+NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 811 KLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 59.7 bits (143), Expect = 3e-09 Identities = 30/57 (52%), Positives = 37/57 (64%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KL+ IE++++ N D L+NR GP K PY +L P D EGLT RGIPNSISI Sbjct: 811 KLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 58.9 bits (141), Expect = 5e-09 Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 1/58 (1%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLK-NRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KL+ IE+++V N+DP L+ NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 788 KLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 58.9 bits (141), Expect = 5e-09 Identities = 30/57 (52%), Positives = 38/57 (66%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KL+ IE+++ N+D L NR GP + PY LL+PN +EGLT RGIPNSISI Sbjct: 816 KLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPN-------SEGLTCRGIPNSISI 865
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 55.5 bits (132), Expect = 5e-08 Identities = 29/51 (56%), Positives = 35/51 (68%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGI 274 KL IEK++V N+D L+NRTGPAK PY LLYP++ EGLT RGI Sbjct: 697 KLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSE------EGLTFRGI 741
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 55.5 bits (132), Expect = 5e-08 Identities = 28/57 (49%), Positives = 35/57 (61%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KL IEKQ++ N D L NR+GP PY LL+P + GLT +GIPNS+SI Sbjct: 811 KLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 55.5 bits (132), Expect = 5e-08 Identities = 29/57 (50%), Positives = 37/57 (64%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KL IE ++ N+DP L +R GP + PY LL+P++ EGLT RGIPNSISI Sbjct: 814 KLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 55.1 bits (131), Expect = 7e-08 Identities = 27/56 (48%), Positives = 35/56 (62%) Frame = -3 Query: 423 LEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 L IE +++ MNS KNR+GP PY LL+P + EGLT +GIPNS+SI Sbjct: 810 LSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 54.7 bits (130), Expect = 9e-08 Identities = 29/57 (50%), Positives = 37/57 (64%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KL IE ++ N+D +L+NR GP + PY LL P++ EGLT RGIPNSISI Sbjct: 807 KLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 54.7 bits (130), Expect = 9e-08 Identities = 28/57 (49%), Positives = 36/57 (63%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 K++ IEK + N D LKNRTG K PY LL+P++ G+T RGIPNS+SI Sbjct: 809 KVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 54.3 bits (129), Expect = 1e-07 Identities = 28/57 (49%), Positives = 35/57 (61%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KL IEKQ++ N + L NRTGP PY LL+P + GLT +GIPNS+SI Sbjct: 810 KLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 42.7 bits (99), Expect = 4e-04 Identities = 19/52 (36%), Positives = 31/52 (59%) Frame = -3 Query: 411 EKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 E+++ N+DP +NR G PY L+ P++ G+T RG+PNS++I Sbjct: 854 EEEIERRNADPSRRNRCGAGVLPYELMAPSS------GPGITCRGVPNSVTI 899
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 42.0 bits (97), Expect = 6e-04 Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Frame = -3 Query: 414 IEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTG----QAEGLTARGIPNSISI 256 I +QV N+DP KNR G PY+LL P+ D T + + GIPNSISI Sbjct: 880 IVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/57 (42%), Positives = 32/57 (56%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +L+ E + N++P+ KNR G PY LL P + G+T RGIPNSISI Sbjct: 846 RLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSE------PGVTGRGIPNSISI 896
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 40.0 bits (92), Expect = 0.002 Identities = 23/57 (40%), Positives = 30/57 (52%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +L+ IE + N D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 874 RLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 40.0 bits (92), Expect = 0.002 Identities = 22/52 (42%), Positives = 29/52 (55%) Frame = -3 Query: 411 EKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 E+ + N+D KNR G PY LL P++ G+T RG+PNSISI Sbjct: 873 EETIERRNADHGRKNRCGAGVLPYELLAPSS------PPGVTCRGVPNSISI 918
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 39.7 bits (91), Expect = 0.003 Identities = 23/57 (40%), Positives = 30/57 (52%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 +L+ IE + N D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 891 RLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 38.9 bits (89), Expect = 0.005 Identities = 23/57 (40%), Positives = 31/57 (54%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 K+ I +QV N D +NR G PY+LL P + + A+ + GIPNSISI Sbjct: 877 KMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRP-LNGNPMDAKTVMEMGIPNSISI 932
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 35.8 bits (81), Expect = 0.044 Identities = 24/57 (42%), Positives = 31/57 (54%) Frame = -3 Query: 426 KLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 KL+ +E + N + LKNR G Y LL P TS+H G+T G+P SISI Sbjct: 846 KLQYLEGVIDERNVNITLKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSISI 896
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 31.2 bits (69), Expect = 1.1 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = +1 Query: 235 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 354 T DVL DG VR G +G+SR+V V EQH ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 358 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 269 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 1.9 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 358 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 269 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 29.3 bits (64), Expect = 4.1 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Frame = -2 Query: 382 PAAQEPHRAGQVPIHAALPKHLRPHGTGRG----AHRQGHPEQHIHL 254 P+ PHR +P H P+H PH H Q HP H H+ Sbjct: 380 PSPHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQ-HPPPHQHI 425
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.9 bits (63), Expect = 5.4 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = -3 Query: 339 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 175 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 174 VCDRELCRCMNN 139 +C+ CM N Sbjct: 115 LCETVRGECMEN 126
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Frame = -3 Query: 183 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQKKSLVLPN 25 C+C C ++ C++N G CT GL G + L AG+ ++ V K L N Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDKNE-CLSN 762 Query: 24 N*VDGG 7 +GG Sbjct: 763 PCQNGG 768
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch| 2) (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 28.5 bits (62), Expect = 7.1 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%) Frame = -3 Query: 183 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQKKSLVLPN 25 C+C C ++ C++N G CT GL G + L AG+ ++ V K L N Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDKNE-CLSN 764 Query: 24 N*VDGG 7 +GG Sbjct: 765 PCQNGG 770
>ALR1_SALTY (P0A1A3) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 247 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 354 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268
>ALR1_SALTI (P0A1A4) Alanine racemase, biosynthetic (EC 5.1.1.1)| Length = 359 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +1 Query: 247 LRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 354 L S AVRD GEP+G GG WV + LG Sbjct: 237 LTSSLIAVRDHKAGEPVG----YGGTWVSERDTRLG 268 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,247,438 Number of Sequences: 219361 Number of extensions: 1262415 Number of successful extensions: 3408 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 3266 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3380 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
