ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl22c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_483801.1| Oryza sativa (japonica cultivar-group), mRNA 86 8e-14
2dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 8e-14
3dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 86 8e-14
4gb|AY105426.1| Zea mays PCO146438 mRNA sequence 72 1e-09
5gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence 68 2e-08
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
7dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
8emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 i... 40 4.0
9gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complet... 40 4.0
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
11gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, compl... 40 4.0
12gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) gen... 40 4.0
13dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
14emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-3... 40 4.0

>ref|XM_483801.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3145

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 103/123 (83%)
 Strand = Plus / Minus

                                                                        
Query: 182  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 241
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2907 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2848

                                                                        
Query: 242  taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 301
              |||||||||| ||| ||||||||||||||||||||  |||| ||||||| |||||| |
Sbjct: 2847 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2788

               
Query: 302  gag 304
            |||
Sbjct: 2787 gag 2785



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>dbj|AK066773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081C24, full
            insert sequence
          Length = 2519

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 103/123 (83%)
 Strand = Plus / Minus

                                                                        
Query: 182  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 241
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2325 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2266

                                                                        
Query: 242  taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 301
              |||||||||| ||| ||||||||||||||||||||  |||| ||||||| |||||| |
Sbjct: 2265 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2206

               
Query: 302  gag 304
            |||
Sbjct: 2205 gag 2203



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>dbj|AK064900.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000L14, full
            insert sequence
          Length = 3181

 Score = 85.7 bits (43), Expect = 8e-14
 Identities = 103/123 (83%)
 Strand = Plus / Minus

                                                                        
Query: 182  aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 241
            |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 2943 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 2884

                                                                        
Query: 242  taatcatctccaactgggccttagcaagagcttgtctcgtctcgtcatatctcctccatc 301
              |||||||||| ||| ||||||||||||||||||||  |||| ||||||| |||||| |
Sbjct: 2883 cgatcatctccagctgagccttagcaagagcttgtctgctctcatcatatcgcctccacc 2824

               
Query: 302  gag 304
            |||
Sbjct: 2823 gag 2821



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>gb|AY105426.1| Zea mays PCO146438 mRNA sequence
          Length = 3165

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                        
Query: 217  ttttcagagagtccattggctgagataatcatctccaactgggccttagcaagagcttgt 276
            ||||| ||||| |||||||| || |  |||||||||| ||||||||||||||||||||||
Sbjct: 2981 ttttcggagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgt 2922

                                        
Query: 277  ctcgtctcgtcatatctcctccatcgag 304
            || |||| ||| || | |||||| ||||
Sbjct: 2921 ctggtcttgtcgtaccgcctccaccgag 2894



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>gb|BT024073.1| Zea mays clone EL01N0507C07 mRNA sequence
          Length = 2068

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                        
Query: 223  gagagtccattggctgagataatcatctccaactgggccttagcaagagcttgtctcgtc 282
            ||||| |||||||| || |  |||||||||| |||||||||||||||||||||||| |||
Sbjct: 1849 gagagcccattggccgacacgatcatctccagctgggccttagcaagagcttgtctggtc 1790

                                  
Query: 283  tcgtcatatctcctccatcgag 304
            | ||| || | |||||| ||||
Sbjct: 1789 ttgtcgtaccgcctccaccgag 1768



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                             
Query: 260      ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgag 304
                |||||||||||||||||||  |||| ||||||| |||||| ||||
Sbjct: 28166495 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgag 28166539



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                            
Query: 182      aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 241
                |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 28166340 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 28166399

                                     
Query: 242      taatcatctccaactgggcct 262
                  |||||||||| ||| ||||
Sbjct: 28166400 cgatcatctccagctgagcct 28166420



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>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0543D10
          Length = 134866

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 260   ccttagcaagagcttgtctcgtctcgtcatatctcctccatcgag 304
             |||||||||||||||||||  |||| ||||||| |||||| ||||
Sbjct: 49968 ccttagcaagagcttgtctgctctcatcatatcgcctccaccgag 50012



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                         
Query: 182   aagctgccagacttttcgaggctatctcatagacattttcagagagtccattggctgaga 241
             |||||||||| || || || |||||||| || ||||| || || || ||||||||||| |
Sbjct: 49813 aagctgccaggctctttgaagctatctcgtacacattctctgatagcccattggctgaca 49872

                                  
Query: 242   taatcatctccaactgggcct 262
               |||||||||| ||| ||||
Sbjct: 49873 cgatcatctccagctgagcct 49893



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>emb|CR392328.18| Zebrafish DNA sequence from clone DKEYP-108C1 in linkage group 5,
            complete sequence
          Length = 182066

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 145  tggcagaatcaaatttgttt 164
            ||||||||||||||||||||
Sbjct: 9480 tggcagaatcaaatttgttt 9461



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>gb|AC008715.6| Homo sapiens chromosome 5 clone CTB-84H3, complete sequence
          Length = 121737

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    taaatacagcagaatatatt 98
             ||||||||||||||||||||
Sbjct: 89696 taaatacagcagaatatatt 89677



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       ccactatagtagcctgttat 67
                ||||||||||||||||||||
Sbjct: 16754860 ccactatagtagcctgttat 16754841



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>gb|AC137770.3| Homo sapiens chromosome 5 clone CTC-806A22, complete sequence
          Length = 156582

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    taaatacagcagaatatatt 98
             ||||||||||||||||||||
Sbjct: 45601 taaatacagcagaatatatt 45620



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>gb|AY190940.1| Drosophila erecta clone DERF01_19_N16 (D1428) genomic sequence
          Length = 43180

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 78    ctaaatacagcagaatatattcagttaa 105
             |||||| |||||||||||||||| ||||
Sbjct: 28764 ctaaatgcagcagaatatattcatttaa 28737



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>dbj|AP003577.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0664F03
          Length = 184242

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     ccactatagtagcctgttat 67
              ||||||||||||||||||||
Sbjct: 106347 ccactatagtagcctgttat 106328



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>emb|AL079352.3|CNS00M8V Human chromosome 14 DNA sequence BAC R-388G3 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176833

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   agacattttcagagagtcca 231
             ||||||||||||||||||||
Sbjct: 33908 agacattttcagagagtcca 33927


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,714,780
Number of Sequences: 3902068
Number of extensions: 2714780
Number of successful extensions: 50117
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50078
Number of HSP's gapped (non-prelim): 39
length of query: 304
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 282
effective length of database: 17,147,199,772
effective search space: 4835510335704
effective search space used: 4835510335704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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